WormBase Tree Display for Sequence: Y59A8B
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| Y59A8B | DNA | Y59A8B | 174664 | ||
|---|---|---|---|---|---|
| SMap | S_child (12) | ||||
| Structure | From | Source | CHROMOSOME_V | ||
| Overlap_right | Y37H2A | 174564 | |||
| Overlap_left | E01B7 | ||||
| Clone_left_end | Y37H2 | 174564 | |||
| Y59A8B | 1 | ||||
| Clone_right_end | E01B7 | 101 | |||
| TY8 | 14360 | ||||
| Y59A8B | 174664 | ||||
| DB_info | Database | EMBL | NDB_AC | AL132898 | |
| NDB_SV | AL132898.3 | ||||
| DB_remark | [121025] Sequence correction: SNP 0 bases @ 20732 | ||||
| [121025] Sequence correction WBsf268072 : Insertion A1 bases from @ 46427 | |||||
| [121025] Sequence correction WBsf268099 : Insertion C1 bases from @ 59638 | |||||
| Keyword | HTG | ||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | |||
| Origin | From_author | Sulston JE | |||
| From_laboratory | HX | ||||
| Date_directory | 000720 | ||||
| Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00000001 | ||||
| Visible | Clone | Y59A8B | |||
| Properties | Genomic_canonical | ||||
| Checksum | MD5 | 3e8561344dd8ac169390b85a2517279c | |||
| Status | Finished | 24 Jul 2000 00:00:00 | |||
| Submitted | 23 Oct 2000 00:00:00 | ||||
| Annotated | 27 Jul 2000 00:00:00 | ||||
| Map | Sequence-V | Ends | Left | 10443 | |
| Right | 10485 | ||||
| Interpolated_map_position | V | 13.4562 | |||
| Assembly_tags | Clone right end | 104 | 101 | E01B7 | |
| 14360 | 14363 | TY8 | |||
| 101 | 104 | E01B7 | |||
| Finished Left | 4 | 1 | Y59A8B | ||
| 1 | 4 | Y59A8B | |||
| annotation | 31559 | 31879 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - single clone in inverted repeat | ||
| First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Part of an inverted repeat.Data edited to reverse sequence. Possible base discrepancies where there are base differences in the reverse sequence. | |||||
| 34550 | 34551 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - single clone in inverted repeat | |||
| 41423 | 41563 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - inverted repeat | |||
First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - Part of an inverted repeat | |||||
| 130979 | 130982 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - 4 Ts missing from one clone | |||
| 74753 | 74817 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - primer chemistry only over this region | |||
| 133535 | 133548 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - | |||
| 151087 | 151092 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - | |||
| 87707 | 87704 | G missing in two templates | |||
| 114646 | 114603 | First select a Feature - [x] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - | |||
| 172829 | 172833 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - single clone in inverted repeat | |||
| 87704 | 87707 | G missing in two templates | |||
| 172830 | 172834 | First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -single clone in loop between inverted repeatPrimer chemistry onlyPossible base discrepancy | |||
| Clone left end | 174568 | 174563 | Y37H2 | ||
| 174569 | 174564 | Y37H2 | |||
| Finished Right | 174660 | 174663 | Y59A8B | ||
| 174664 | 174661 | Y59A8B | |||
| Method | Genomic_canonical |
