WormBase Tree Display for Gene: WBGene00000935
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WBGene00000935 | SMap | S_parent | Sequence | F56D1 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | daz-1 | Person_evidence | WBPerson634 | |||||
Sequence_name | F56D1.7 | ||||||||
Molecular_name | F56D1.7 | ||||||||
F56D1.7.1 | |||||||||
CE27175 | |||||||||
Other_name | CELE_F56D1.7 | Accession_evidence | NDB | BX284602 | |||||
Public_name | daz-1 | ||||||||
DB_info | Database | AceView | gene | 2F747 | |||||
WormQTL | gene | WBGene00000935 | |||||||
WormFlux | gene | WBGene00000935 | |||||||
NDB | locus_tag | CELE_F56D1.7 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000935|UniProtKB=Q20870 | |||||||
family | PTHR11176 | ||||||||
NCBI | gene | 173931 | |||||||
RefSeq | protein | NM_062635.5 | |||||||
SwissProt | UniProtAcc | Q20870 | |||||||
TREEFAM | TREEFAM_ID | TF324396 | |||||||
UniProt_GCRP | UniProtAcc | Q20870 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:22 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | daz | ||||||||
Allele (32) | |||||||||
Legacy_information | [Sugimoto A] encodes a protein similar to human DAZ (Deleted in Azoospermia), includes a RNP-type RNA-binding motif and a DAZ-family-specific motif, tj3 (deletion allele) is defective in progression of meiosis during oogenesis, spermatogenesis unaffected. | ||||||||
Strain | WBStrain00033879 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (12) | |||||||||
Ortholog (36) | |||||||||
Structured_description | Concise_description | daz-1 encodes a protein containing an RNA recognition motif that is required for the progression of meiosis during oogenesis; DAZ-1 is expressed in the germline, and expression levels peak in the proximal pachytene region; cpb-3(bt17);daz-1(tj3) hermaphrodites have a synthetic phenotype of total sterility and masculinization; DAZ-1 colocalizes with CPB-3 invivo, coimmunoprecipitates with CPB-3, and binds CPB-3 in two-hybrid assays. | Paper_evidence | WBPaper00003942 | |||||
WBPaper00027619 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
WBPerson567 | |||||||||
Date_last_updated | 19 Apr 2007 00:00:00 | ||||||||
Automated_description | Predicted to enable mRNA 3'-UTR binding activity and translation activator activity. Predicted to be involved in 3'-UTR-mediated mRNA stabilization and positive regulation of translational initiation. Located in cytoplasm. Expressed in germ line; gonad; and in male. Is an ortholog of several human genes including DAZ1 (deleted in azoospermia 1); DAZ2 (deleted in azoospermia 2); and DAZ3 (deleted in azoospermia 3). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F56D1.7 | |||||||
Corresponding_transcript | F56D1.7.1 | ||||||||
Other_sequence (103) | |||||||||
Associated_feature | WBsf987888 | ||||||||
WBsf987889 | |||||||||
WBsf987890 | |||||||||
WBsf987891 | |||||||||
WBsf1012231 | |||||||||
Experimental_info | RNAi_result | WBRNAi00048685 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00008878 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00048687 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00071139 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr964 | ||||||||
Expr2818 | |||||||||
Expr3154 | |||||||||
Expr7850 | |||||||||
Expr1011853 | |||||||||
Expr1030582 | |||||||||
Expr1152445 | |||||||||
Expr2010796 | |||||||||
Expr2029033 | |||||||||
Drives_construct | WBCnstr00000165 | ||||||||
WBCnstr00005257 | |||||||||
WBCnstr00015766 | |||||||||
WBCnstr00015767 | |||||||||
WBCnstr00037189 | |||||||||
Construct_product | WBCnstr00000165 | ||||||||
WBCnstr00005239 | |||||||||
WBCnstr00037189 | |||||||||
Antibody | WBAntibody00000825 | ||||||||
Microarray_results (21) | |||||||||
Expression_cluster (211) | |||||||||
Interaction (29) | |||||||||
WBProcess | WBbiopr:00000068 | ||||||||
Map_info | Map | II | Position | -1.40837 | Error | 0.030556 | |||
Positive | Positive_clone | F56D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4253 | |||||||
4538 | |||||||||
Pseudo_map_position | |||||||||
Reference (36) | |||||||||
Remark | Sequence connection updated to .7 rather than .5 following advice of Danielle Thierry-Mieg. 02/06/12 krb. | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |