WormBase Tree Display for Gene: WBGene00000935
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| WBGene00000935 | SMap | S_parent | Sequence | F56D1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | daz-1 | Person_evidence | WBPerson634 | |||||
| Sequence_name | F56D1.7 | ||||||||
| Molecular_name | F56D1.7 | ||||||||
| F56D1.7.1 | |||||||||
| CE27175 | |||||||||
| Other_name | CELE_F56D1.7 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | daz-1 | ||||||||
| DB_info | Database | AceView | gene | 2F747 | |||||
| WormQTL | gene | WBGene00000935 | |||||||
| WormFlux | gene | WBGene00000935 | |||||||
| NDB | locus_tag | CELE_F56D1.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000935|UniProtKB=Q20870 | |||||||
| family | PTHR11176 | ||||||||
| NCBI | gene | 173931 | |||||||
| RefSeq | protein | NM_062635.5 | |||||||
| SwissProt | UniProtAcc | Q20870 | |||||||
| TREEFAM | TREEFAM_ID | TF324396 | |||||||
| UniProt_GCRP | UniProtAcc | Q20870 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:22 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | daz | ||||||||
| Allele (32) | |||||||||
| Legacy_information | [Sugimoto A] encodes a protein similar to human DAZ (Deleted in Azoospermia), includes a RNP-type RNA-binding motif and a DAZ-family-specific motif, tj3 (deletion allele) is defective in progression of meiosis during oogenesis, spermatogenesis unaffected. | ||||||||
| Strain | WBStrain00033879 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (36) | |||||||||
| Structured_description | Concise_description | daz-1 encodes a protein containing an RNA recognition motif that is required for the progression of meiosis during oogenesis; DAZ-1 is expressed in the germline, and expression levels peak in the proximal pachytene region; cpb-3(bt17);daz-1(tj3) hermaphrodites have a synthetic phenotype of total sterility and masculinization; DAZ-1 colocalizes with CPB-3 invivo, coimmunoprecipitates with CPB-3, and binds CPB-3 in two-hybrid assays. | Paper_evidence | WBPaper00003942 | |||||
| WBPaper00027619 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 19 Apr 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable mRNA 3'-UTR binding activity and translation activator activity. Predicted to be involved in 3'-UTR-mediated mRNA stabilization and positive regulation of translational initiation. Located in cytoplasm. Expressed in germ line; gonad; and in male. Is an ortholog of several human genes including DAZ1 (deleted in azoospermia 1); DAZ2 (deleted in azoospermia 2); and DAZ3 (deleted in azoospermia 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F56D1.7 | |||||||
| Corresponding_transcript | F56D1.7.1 | ||||||||
| Other_sequence (103) | |||||||||
| Associated_feature | WBsf987888 | ||||||||
| WBsf987889 | |||||||||
| WBsf987890 | |||||||||
| WBsf987891 | |||||||||
| WBsf1012231 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00048685 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00008878 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048687 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00071139 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr964 | ||||||||
| Expr2818 | |||||||||
| Expr3154 | |||||||||
| Expr7850 | |||||||||
| Expr1011853 | |||||||||
| Expr1030582 | |||||||||
| Expr1152445 | |||||||||
| Expr2010796 | |||||||||
| Expr2029033 | |||||||||
| Drives_construct | WBCnstr00000165 | ||||||||
| WBCnstr00005257 | |||||||||
| WBCnstr00015766 | |||||||||
| WBCnstr00015767 | |||||||||
| WBCnstr00037189 | |||||||||
| Construct_product | WBCnstr00000165 | ||||||||
| WBCnstr00005239 | |||||||||
| WBCnstr00037189 | |||||||||
| Antibody | WBAntibody00000825 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (211) | |||||||||
| Interaction | WBInteraction000008774 | ||||||||
| WBInteraction000008775 | |||||||||
| WBInteraction000008776 | |||||||||
| WBInteraction000032571 | |||||||||
| WBInteraction000033273 | |||||||||
| WBInteraction000033274 | |||||||||
| WBInteraction000034242 | |||||||||
| WBInteraction000035617 | |||||||||
| WBInteraction000037133 | |||||||||
| WBInteraction000039543 | |||||||||
| WBInteraction000039544 | |||||||||
| WBInteraction000039545 | |||||||||
| WBInteraction000039546 | |||||||||
| WBInteraction000115593 | |||||||||
| WBInteraction000175557 | |||||||||
| WBInteraction000325470 | |||||||||
| WBInteraction000550142 | |||||||||
| WBInteraction000550465 | |||||||||
| WBInteraction000550466 | |||||||||
| WBInteraction000550510 | |||||||||
| WBInteraction000550563 | |||||||||
| WBInteraction000550571 | |||||||||
| WBInteraction000550572 | |||||||||
| WBInteraction000550659 | |||||||||
| WBInteraction000550673 | |||||||||
| WBInteraction000551351 | |||||||||
| WBInteraction000556759 | |||||||||
| WBInteraction000570418 | |||||||||
| WBInteraction000582924 | |||||||||
| WBProcess | WBbiopr:00000068 | ||||||||
| Map_info | Map | II | Position | -1.40837 | Error | 0.030556 | |||
| Positive | Positive_clone | F56D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4253 | |||||||
| 4538 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (36) | |||||||||
| Remark | Sequence connection updated to .7 rather than .5 following advice of Danielle Thierry-Mieg. 02/06/12 krb. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
