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WormBase Tree Display for Gene: WBGene00000780

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Name Class

WBGene00000780EvidencePerson_evidenceWBPerson567
SMapS_parentSequenceF49D11
IdentityVersion1
NameCGC_namecpn-4Person_evidenceWBPerson268
Sequence_nameF49D11.8
Molecular_nameF49D11.8
F49D11.8.1
CE17082
Other_nameCELE_F49D11.8Accession_evidenceNDBBX284601
Public_namecpn-4
DB_infoDatabase (8)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:21WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcpn
Allele (24)
StrainWBStrain00031054
RNASeq_FPKM (74)
GO_annotation00033209
00033210
00033211
OrthologWBGene00056029Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00039390Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
WormBase-Compara
WBGene00163191Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00128399Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00159661Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00131242Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00064707Caenorhabditis remaneiFrom_analysisTreeFam
CBOVI.g10369Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g14321Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g2580Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g13250Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g22831Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g15414Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g4485Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g14441Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g11874Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g15367Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g22270Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00306.g8909Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-cpn-4Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g17886Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01704.g22633Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_14843Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_001689Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10591Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g16486Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10274500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g2172Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00262529Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00291913Trichuris murisFrom_analysisWormBase-Compara
SGD:S000005894Saccharomyces cerevisiaeFrom_analysisHieranoid
Inparanoid
OrthoInspector
Panther
ParalogWBGene00000779Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00000777Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000778Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00006819Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00016898Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00019361Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020808Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptioncpn-4 encodes a calponin homolog, most closely related to its paralog CPN-3 in C. elegans; CPN-4 is somewhat more similar to calponins per se (such as CLP1 and CLP2 in humans) than to the to the calponin paralogs transgelin (SM22 alpha) or neuronal protein NP25.Paper_evidenceWBPaper00012852
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable actin filament binding activity. Predicted to be involved in actin filament organization. Predicted to be located in actin cytoskeleton.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF49D11.8
Corresponding_CDS_historyF49D11.8:wp93
Corresponding_transcriptF49D11.8.1
Other_sequence (48)
Associated_featureWBsf649609
WBsf985129
WBsf985130
WBsf1010610
WBsf220301
Experimental_infoRNAi_resultWBRNAi00047828Inferred_automaticallyRNAi_primary
WBRNAi00032525Inferred_automaticallyRNAi_primary
WBRNAi00003728Inferred_automaticallyRNAi_primary
Expr_patternExpr1014776
Expr1151664
Expr2010496
Expr2028736
Microarray_results (19)
Expression_cluster (203)
Interaction (13)
Map_infoMapIPosition5.90464Error0.033967
PositivePositive_cloneF49D11Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00028483
WBPaper00028985
WBPaper00033099
WBPaper00038491
WBPaper00046461
WBPaper00055090
WBPaper00065026
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene