WormBase Tree Display for Gene: WBGene00000532
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WBGene00000532 | SMap | S_parent | Sequence | CHROMOSOME_II | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | clh | ||||||
Allele (64) | |||||||
Strain | WBStrain00001511 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (16) | |||||||
Ortholog (45) | |||||||
Paralog | WBGene00000533 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WormBase-Compara | |||||||
WBGene00000528 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00000529 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00000530 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00000531 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | The clh-5 gene encodes a chloride channel, whose human homologs include CLC1 and CLCN5; the latter homolog is imvolved in receptor-mediated endocytosis. | Paper_evidence | WBPaper00004103 | |||
WBPaper00004883 | |||||||
WBPaper00012835 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable voltage-gated chloride channel activity. Predicted to be involved in chloride transmembrane transport. Predicted to be located in Golgi apparatus; early endosome; and synaptic vesicle. Expressed in several structures, including head and tail. Human ortholog(s) of this gene implicated in Raynaud-Claes syndrome and X-linked recessive disease (multiple). Is an ortholog of human CLCN4 (chloride voltage-gated channel 4). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0111815 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2023) | ||
DOID:0050699 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2023) | ||||
DOID:0112060 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2022) | ||||
DOID:0111798 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2023) | ||||
DOID:0080353 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2023) | ||||
Molecular_info | Corresponding_CDS | C07H4.2 | |||||
Corresponding_CDS_history | C07H4.2:wp48 | ||||||
Corresponding_transcript | C07H4.2.1 | ||||||
Other_sequence (49) | |||||||
Associated_feature | WBsf223603 | ||||||
Experimental_info | RNAi_result | WBRNAi00062113 | Inferred_automatically | RNAi_primary | |||
WBRNAi00086835 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00065615 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00040037 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00028650 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00077549 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00010411 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Chronogram1083 | ||||||
Expr1126 | |||||||
Expr5200 | |||||||
Expr1027246 | |||||||
Expr1030318 | |||||||
Expr1144107 | |||||||
Expr2010232 | |||||||
Expr2028474 | |||||||
Drives_construct | WBCnstr00002368 | ||||||
WBCnstr00010094 | |||||||
WBCnstr00037468 | |||||||
Construct_product | WBCnstr00037468 | ||||||
Microarray_results (21) | |||||||
Expression_cluster (103) | |||||||
Interaction (31) | |||||||
Map_info | Map | II | Position | 1.01436 | Error | 0.007131 | |
Positive | Positive_clone | C07H4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4337 | |||||
5255 | |||||||
5491 | |||||||
Pseudo_map_position | |||||||
Reference (17) | |||||||
Remark | sequence connection from [George AL] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |