WormBase Tree Display for Gene: WBGene00000532
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| WBGene00000532 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | clh-5 | |||||||
| Sequence_name | C07H4.2 | ||||||||
| Molecular_name | C07H4.2 | ||||||||
| C07H4.2.1 | |||||||||
| CE27360 | |||||||||
| Other_name | CELE_C07H4.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | clh-5 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clh | ||||||||
| Allele (64) | |||||||||
| Strain | WBStrain00001511 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (45) | |||||||||
| Paralog | WBGene00000533 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| WBGene00000528 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000529 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000530 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000531 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | The clh-5 gene encodes a chloride channel, whose human homologs include CLC1 and CLCN5; the latter homolog is imvolved in receptor-mediated endocytosis. | Paper_evidence | WBPaper00004103 | |||||
| WBPaper00004883 | |||||||||
| WBPaper00012835 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable voltage-gated chloride channel activity. Predicted to be involved in chloride transmembrane transport. Predicted to be located in Golgi apparatus; early endosome; and synaptic vesicle. Expressed in several structures, including head and tail. Human ortholog(s) of this gene implicated in Raynaud-Claes syndrome and X-linked recessive disease (multiple). Is an ortholog of human CLCN4 (chloride voltage-gated channel 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111815 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2023) | ||||
| DOID:0050699 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2023) | ||||||
| DOID:0112060 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2022) | ||||||
| DOID:0111798 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2023) | ||||||
| DOID:0080353 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2023) | ||||||
| Molecular_info | Corresponding_CDS | C07H4.2 | |||||||
| Corresponding_CDS_history | C07H4.2:wp48 | ||||||||
| Corresponding_transcript | C07H4.2.1 | ||||||||
| Other_sequence | AB035090 | ||||||||
| ACC35759_1 | |||||||||
| BM01456 | |||||||||
| Name_isotig01560 | |||||||||
| CR04731 | |||||||||
| JI466673.1 | |||||||||
| ACC05943_1 | |||||||||
| HG09406 | |||||||||
| BMC01226_1 | |||||||||
| FC546043.1 | |||||||||
| HG11028 | |||||||||
| Tcir_isotig29199 | |||||||||
| Acan_isotig07548 | |||||||||
| FG348811.1 | |||||||||
| CRC03906_1 | |||||||||
| PT02485 | |||||||||
| Dviv_isotig23580 | |||||||||
| EX557091.1 | |||||||||
| JI165867.1 | |||||||||
| Tcol_isotig14425 | |||||||||
| JI464845.1 | |||||||||
| FC551430.1 | |||||||||
| FC549721.1 | |||||||||
| FC550388.1 | |||||||||
| Tcol_isotig18813 | |||||||||
| FC554386.1 | |||||||||
| HGC08301_1 | |||||||||
| Tcir_isotig10006 | |||||||||
| Hbac_isotig05222 | |||||||||
| Tcir_isotig28228 | |||||||||
| Dviv_isotig28328 | |||||||||
| BMC02563_1 | |||||||||
| GR978882.1 | |||||||||
| SSC00034_1 | |||||||||
| Oden_isotig14039 | |||||||||
| FC544863.1 | |||||||||
| CBC10907_1 | |||||||||
| TSC12340_1 | |||||||||
| CJC17047_1 | |||||||||
| SC00305 | |||||||||
| TV00506 | |||||||||
| PP01337 | |||||||||
| PTC01989_1 | |||||||||
| JI221726.1 | |||||||||
| PPC00296_1 | |||||||||
| JI460716.1 | |||||||||
| Oden_isotig14038 | |||||||||
| SS00306 | |||||||||
| ES563966.1 | |||||||||
| Associated_feature | WBsf223603 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00062113 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00086835 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065615 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040037 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028650 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00077549 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010411 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1083 | ||||||||
| Expr1126 | |||||||||
| Expr5200 | |||||||||
| Expr1027246 | |||||||||
| Expr1030318 | |||||||||
| Expr1144107 | |||||||||
| Expr2010232 | |||||||||
| Expr2028474 | |||||||||
| Drives_construct | WBCnstr00002368 | ||||||||
| WBCnstr00010094 | |||||||||
| WBCnstr00037468 | |||||||||
| Construct_product | WBCnstr00037468 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (103) | |||||||||
| Interaction (31) | |||||||||
| Map_info | Map | II | Position | 1.01436 | Error | 0.007131 | |||
| Positive | Positive_clone | C07H4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4337 | |||||||
| 5255 | |||||||||
| 5491 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (17) | |||||||||
| Remark | sequence connection from [George AL] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
