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WormBase Tree Display for Gene: WBGene00000526

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Name Class

WBGene00000526EvidencePerson_evidenceWBPerson765
SMapS_parentSequenceC01C10
IdentityVersion1
NameCGC_nameclc-5
Sequence_nameC01C10.4
Molecular_nameC01C10.4
C01C10.4.1
CE28882
Other_nameCELE_C01C10.4Accession_evidenceNDBBX284606
Public_nameclc-5
DB_infoDatabaseAceViewgeneXI53
WormQTLgeneWBGene00000526
WormFluxgeneWBGene00000526
NDBlocus_tagCELE_C01C10.4
PanthergeneCAEEL|WormBase=WBGene00000526|UniProtKB=Q9NGJ7
familyPTHR10671
NCBIgene181000
RefSeqproteinNM_076857.7
SwissProtUniProtAccQ9NGJ7
TREEFAMTREEFAM_IDTF316179
UniProt_GCRPUniProtAccQ9NGJ7
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:21WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classclc
Allele (47)
StrainWBStrain00051462
RNASeq_FPKM (74)
GO_annotation00096673
00096674
00096675
00096676
00096677
00096678
00107535
Contained_in_operonCEOPX088
OrthologWBGene00051331Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00036567Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00139707Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00133708Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00118277Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00222135Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g2856Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1609Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g11407Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g19935Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g2909Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g20517Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1734Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g6123Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g16059Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g21232Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00442.g10910Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-clc-5Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g12463Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00158.g5900Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00176Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_024774Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01110Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_X0205000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g19409Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00240485Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00258982Strongyloides rattiFrom_analysisWormBase-Compara
ParalogWBGene00000522Caenorhabditis elegansFrom_analysisPanther
WBGene00000523Caenorhabditis elegansFrom_analysisTreeFam
Panther
WBGene00013458
WBGene00011014Caenorhabditis elegansFrom_analysisTreeFam
WBGene00016067Caenorhabditis elegansFrom_analysisTreeFam
WBGene00010742Caenorhabditis elegansFrom_analysisTreeFam
Panther
WBGene00016706Caenorhabditis elegansFrom_analysisPanther
WBGene00021415Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionConcise_descriptionclc-5 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia; CLC-5 is worm-specific, with obvious homologs only in C. elegans; CLC-5 has no obvious function in mass RNAi assays; claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water.Paper_evidenceWBPaper00004961
WBPaper00005654
WBPaper00005946
WBPaper00005975
WBPaper00012856
WBPaper00018356
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to be located in plasma membrane.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC01C10.4
Corresponding_transcriptC01C10.4.1
Other_sequence (17)
Associated_featureWBsf662967
WBsf235934
Experimental_infoRNAi_resultWBRNAi00009908Inferred_automaticallyRNAi_primary
WBRNAi00039293Inferred_automaticallyRNAi_primary
Expr_patternExpr1022861
Expr1030313
Expr1143411
Expr2010045
Expr2028286
Drives_constructWBCnstr00037473
Construct_productWBCnstr00037473
Microarray_results (20)
Expression_cluster (123)
InteractionWBInteraction000579893
Map_infoMapXPosition-1.72843
PositivePositive_cloneC01C10Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00039831
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene