WormBase Tree Display for Gene: WBGene00000476
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| WBGene00000476 | Evidence | Paper_evidence | WBPaper00005226 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_I | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | cfi-1 | Person_evidence | WBPerson576 | |||||
| Sequence_name | T23D8.8 | ||||||||
| Molecular_name | T23D8.8 | ||||||||
| T23D8.8.1 | |||||||||
| CE31068 | |||||||||
| Other_name | CELE_T23D8.8 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | cfi-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cfi | ||||||||
| Allele (65) | |||||||||
| Strain | WBStrain00029686 | ||||||||
| WBStrain00029777 | |||||||||
| WBStrain00030512 | |||||||||
| WBStrain00050734 | |||||||||
| WBStrain00050880 | |||||||||
| WBStrain00050881 | |||||||||
| WBStrain00052003 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (45) | |||||||||
| Paralog | WBGene00002717 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Structured_description | Concise_description | cfi-1 encodes a DNA-binding protein containing an AT-rich interaction domain (ARID) that affects differentiation of the URA sensory neurons, AVD, and PVC interneurons; acts downstream of UNC-86 and LIN-32 in controlling URA and IL2 cell fate, and is expressed in some neurons and muscle cells. | Paper_evidence | WBPaper00005226 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II; neuron fate specification; and positive regulation of transcription by RNA polymerase II. Located in nucleus. Expressed in ganglia; head muscle; neurons; and pharyngeal muscle cell. Is an ortholog of human ARID3B (AT-rich interaction domain 3B). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T23D8.8 | |||||||
| Corresponding_CDS_history | T23D8.8:wp80 | ||||||||
| Corresponding_transcript | T23D8.8.1 | ||||||||
| Other_sequence (11) | |||||||||
| Associated_feature (13) | |||||||||
| Transcription_factor | WBTranscriptionFactor001067 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00081569 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00004283 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00053925 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035861 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00075505 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1870 | ||||||||
| Expr7902 | |||||||||
| Expr13470 | |||||||||
| Expr1018393 | |||||||||
| Expr1030278 | |||||||||
| Expr1157470 | |||||||||
| Expr2009936 | |||||||||
| Expr2028176 | |||||||||
| Drives_construct | WBCnstr00012979 | ||||||||
| WBCnstr00037509 | |||||||||
| Construct_product | WBCnstr00018602 | ||||||||
| WBCnstr00037509 | |||||||||
| WBCnstr00038777 | |||||||||
| WBCnstr00038779 | |||||||||
| Antibody | WBAntibody00000501 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (130) | |||||||||
| Interaction (51) | |||||||||
| Map_info | Map | I | Position | 4.15343 | Error | 0.021973 | |||
| Positive | Positive_clone | K07A5 | |||||||
| T23D8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Negative | Negative_clone | C03C11 | |||||||
| T24D1 | |||||||||
| Mapping_data | Multi_point | 4062 | |||||||
| 5650 | |||||||||
| Pos_neg_data | 10677 | ||||||||
| Reference (18) | |||||||||
| Remark | Data extracted from cgc5226. Negative method is cosmid rescue. Postitive method is cosmid rescue [030108 ck1] | ||||||||
| Method | Gene |
