WormBase Tree Display for Gene: WBGene00000476
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WBGene00000476 | Evidence | Paper_evidence | WBPaper00005226 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | CHROMOSOME_I | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | cfi-1 | Person_evidence | WBPerson576 | |||||
Sequence_name | T23D8.8 | ||||||||
Molecular_name | T23D8.8 | ||||||||
T23D8.8.1 | |||||||||
CE31068 | |||||||||
Other_name | CELE_T23D8.8 | Accession_evidence | NDB | BX284601 | |||||
Public_name | cfi-1 | ||||||||
DB_info | Database | AceView | gene | 1K570 | |||||
WormQTL | gene | WBGene00000476 | |||||||
SignaLink | protein | WBGene00000476 | |||||||
WormFlux | gene | WBGene00000476 | |||||||
NDB | locus_tag | CELE_T23D8.8 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000476|UniProtKB=O02326 | |||||||
family | PTHR15348 | ||||||||
NCBI | gene | 188793 | |||||||
RefSeq | protein | NM_060243.4 | |||||||
SwissProt | UniProtAcc | O02326 | |||||||
TREEFAM | TREEFAM_ID | TF320364 | |||||||
UniProt_GCRP | UniProtAcc | O02326 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cfi | ||||||||
Allele (65) | |||||||||
Strain | WBStrain00029686 | ||||||||
WBStrain00029777 | |||||||||
WBStrain00030512 | |||||||||
WBStrain00050734 | |||||||||
WBStrain00050880 | |||||||||
WBStrain00050881 | |||||||||
WBStrain00052003 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (17) | |||||||||
Ortholog (45) | |||||||||
Paralog | WBGene00002717 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Structured_description | Concise_description | cfi-1 encodes a DNA-binding protein containing an AT-rich interaction domain (ARID) that affects differentiation of the URA sensory neurons, AVD, and PVC interneurons; acts downstream of UNC-86 and LIN-32 in controlling URA and IL2 cell fate, and is expressed in some neurons and muscle cells. | Paper_evidence | WBPaper00005226 | |||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enables sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II; neuron fate specification; and positive regulation of transcription by RNA polymerase II. Located in nucleus. Expressed in ganglia; head muscle; neurons; and pharyngeal muscle cell. Is an ortholog of human ARID3B (AT-rich interaction domain 3B). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T23D8.8 | |||||||
Corresponding_CDS_history | T23D8.8:wp80 | ||||||||
Corresponding_transcript | T23D8.8.1 | ||||||||
Other_sequence (11) | |||||||||
Associated_feature (13) | |||||||||
Transcription_factor | WBTranscriptionFactor001067 | ||||||||
Experimental_info | RNAi_result | WBRNAi00081569 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00004283 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00053925 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00035861 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00075505 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1870 | ||||||||
Expr7902 | |||||||||
Expr13470 | |||||||||
Expr1018393 | |||||||||
Expr1030278 | |||||||||
Expr1157470 | |||||||||
Expr2009936 | |||||||||
Expr2028176 | |||||||||
Drives_construct | WBCnstr00012979 | ||||||||
WBCnstr00037509 | |||||||||
Construct_product | WBCnstr00018602 | ||||||||
WBCnstr00037509 | |||||||||
WBCnstr00038777 | |||||||||
WBCnstr00038779 | |||||||||
Antibody | WBAntibody00000501 | ||||||||
Microarray_results (21) | |||||||||
Expression_cluster (130) | |||||||||
Interaction (51) | |||||||||
Map_info | Map | I | Position | 4.15343 | Error | 0.021973 | |||
Positive | Positive_clone | K07A5 | |||||||
T23D8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
Negative | Negative_clone | C03C11 | |||||||
T24D1 | |||||||||
Mapping_data | Multi_point | 4062 | |||||||
5650 | |||||||||
Pos_neg_data | 10677 | ||||||||
Reference (18) | |||||||||
Remark | Data extracted from cgc5226. Negative method is cosmid rescue. Postitive method is cosmid rescue [030108 ck1] | ||||||||
Method | Gene |