WormBase Tree Display for Gene: WBGene00000476
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WBGene00000476 | Evidence | Paper_evidence | WBPaper00005226 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | CHROMOSOME_I | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | cfi-1 | Person_evidence | WBPerson576 | |||||
Sequence_name | T23D8.8 | ||||||||
Molecular_name | T23D8.8 | ||||||||
T23D8.8.1 | |||||||||
CE31068 | |||||||||
Other_name | CELE_T23D8.8 | Accession_evidence | NDB | BX284601 | |||||
Public_name | cfi-1 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cfi | ||||||||
Allele (65) | |||||||||
Strain | WBStrain00029686 | ||||||||
WBStrain00029777 | |||||||||
WBStrain00030512 | |||||||||
WBStrain00050734 | |||||||||
WBStrain00050880 | |||||||||
WBStrain00050881 | |||||||||
WBStrain00052003 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (17) | |||||||||
Ortholog (45) | |||||||||
Paralog | WBGene00002717 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Structured_description | Concise_description | cfi-1 encodes a DNA-binding protein containing an AT-rich interaction domain (ARID) that affects differentiation of the URA sensory neurons, AVD, and PVC interneurons; acts downstream of UNC-86 and LIN-32 in controlling URA and IL2 cell fate, and is expressed in some neurons and muscle cells. | Paper_evidence | WBPaper00005226 | |||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enables sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II; neuron fate specification; and positive regulation of transcription by RNA polymerase II. Located in nucleus. Expressed in ganglia; head muscle; neurons; and pharyngeal muscle cell. Is an ortholog of human ARID3B (AT-rich interaction domain 3B). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T23D8.8 | |||||||
Corresponding_CDS_history | T23D8.8:wp80 | ||||||||
Corresponding_transcript | T23D8.8.1 | ||||||||
Other_sequence (11) | |||||||||
Associated_feature (13) | |||||||||
Transcription_factor | WBTranscriptionFactor001067 | ||||||||
Experimental_info (8) | |||||||||
Map_info | Map | I | Position | 4.15343 | Error | 0.021973 | |||
Positive | Positive_clone | K07A5 | |||||||
T23D8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
Negative | Negative_clone | C03C11 | |||||||
T24D1 | |||||||||
Mapping_data | Multi_point | 4062 | |||||||
5650 | |||||||||
Pos_neg_data | 10677 | ||||||||
Reference (18) | |||||||||
Remark | Data extracted from cgc5226. Negative method is cosmid rescue. Postitive method is cosmid rescue [030108 ck1] | ||||||||
Method | Gene |