WormBase Tree Display for Gene: WBGene00000117

WBGene00000117 SMap: S_parent: Sequence: F42G9
  Identity: Version: 1
    Name: CGC_name: alh-11 Person_evidence: WBPerson651
      Sequence_name: F42G9.5
      Molecular_name: F42G9.5a
        F42G9.5a.1
        CE07233
        F42G9.5b
        CE30790
        F42G9.5b.1
        F42G9.5b.2
      Other_name: CELE_F42G9.5 Accession_evidence: NDB BX284603
      Public_name: alh-11
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:20 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: alh
    Allele (84)
    RNASeq_FPKM (74)
    GO_annotation: 00067910
      00067911
      00067912
      00106830
      00106831
    Contained_in_operon: CEOP3034
    Ortholog (36)
    Paralog (11)
    Structured_description: Automated_description: Predicted to enable 4-trimethylammoniobutyraldehyde dehydrogenase activity and aminobutyraldehyde dehydrogenase activity. Is an ortholog of human ALDH9A1 (aldehyde dehydrogenase 9 family member A1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F42G9.5a
      F42G9.5b
    Corresponding_transcript: F42G9.5a.1
      F42G9.5b.1
      F42G9.5b.2
    Other_sequence (56)
    Associated_feature: WBsf976228
      WBsf976233
      WBsf976234
      WBsf226128
  Experimental_info: RNAi_result: WBRNAi00032159 Inferred_automatically: RNAi_primary
      WBRNAi00006545 Inferred_automatically: RNAi_primary
      WBRNAi00006555 Inferred_automatically: RNAi_primary
      WBRNAi00047135 Inferred_automatically: RNAi_primary
      WBRNAi00032158 Inferred_automatically: RNAi_primary
      WBRNAi00047136 Inferred_automatically: RNAi_primary
      WBRNAi00014852 Inferred_automatically: RNAi_primary
      WBRNAi00001011 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1022730
      Expr1030064
      Expr1151003
      Expr2009300
      Expr2027537
    Drives_construct: WBCnstr00037719
    Construct_product: WBCnstr00037719
    Microarray_results (30)
    Expression_cluster: WBPaper00033065:clk-1(qm30)_upregulated
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00035211:age-1_vs_N2_downregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00042561:smgl-1(RNAi)_downregulated
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Spermatogenic
      WBPaper00046012:tdp-1(ok803)_downregulated
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049217:DAF-16_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:stavudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055648:germline_expressed
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061466:nath-10(icb99)_downregulated
      WBPaper00061466:nath-10(icb102)_upregulated
      WBPaper00061527:C06G3.9-fce-1_1482
      WBPaper00061530:nhr-49(e2144)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062590:Aging_upregulated_body-wall-muscle
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064632:daf-2(e1370)_upregulated_intestine
      WBPaper00065373:sek-1(km4)_downregulated_cisplatin
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      cgc4386_cluster_5_1
      cgc4489_group_5
      WBPaper00024671:AFD_AWB_vs_unsorted_upregulated
      WBPaper00025032:cluster_4
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Enriched_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00030839:Embryo_A_Class
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:0hr_muscle_enriched
      WBPaper00031003:total_muscle_depleted
      WBPaper00031003:total_muscle_enriched
      WBPaper00031039:mtss-1(RNAi)_upregulated
      WBPaper00031832:slr-2_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00037901:GLD-1_mRNA_targets
      WBPaper00038231:Cry5B_1.5-fold_downregulated
      WBPaper00038231:Cry5B_2-fold_downregulated
      WBPaper00040210:Chlorpyrifos_16C_regulated
      WBPaper00040210:Diazinon_24C_regulated
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00040858:eQTL_regulated_old
      WBPaper00040985:AIN-2_asynchronous_intestine
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041002:HF_11d_2.0mM_Up
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00045673:colistin_upregulated
      WBPaper00045960:L1-L4-lethargus_downregulated
      WBPaper00045960:L4-lethargus_downregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(53_min)
      [cgc5767]:expression_class_SM
      [cgc5767]:expression_class_SMD
      [cgc6390]:herm_soma-enriched
    Interaction: WBInteraction000122522
      WBInteraction000122523
      WBInteraction000122524
      WBInteraction000270882
      WBInteraction000329347
      WBInteraction000359529
      WBInteraction000368134
      WBInteraction000383945
      WBInteraction000570988
  Map_info: Map: III Position: -26.0689 Error: 0.022717
    Positive: Positive_clone: F42G9 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00042257
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene