WormBase Tree Display for Gene: WBGene00000024
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| WBGene00000024 | SMap | S_parent | Sequence | AC3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | abu-1 | Person_evidence | WBPerson530 | |||||
| Sequence_name | AC3.3 | ||||||||
| Molecular_name | AC3.3 | ||||||||
| AC3.3.1 | |||||||||
| CE05133 | |||||||||
| Other_name | pqn-1 | ||||||||
| CELE_AC3.3 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | abu-1 | ||||||||
| DB_info | Database | AceView | gene | 5K858 | |||||
| WormQTL | gene | WBGene00000024 | |||||||
| WormFlux | gene | WBGene00000024 | |||||||
| NDB | locus_tag | CELE_AC3.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000024|UniProtKB=Q17400 | |||||||
| family | PTHR31895 | ||||||||
| NCBI | gene | 181800 | |||||||
| RefSeq | protein | NM_073266.4 | |||||||
| TREEFAM | TREEFAM_ID | TF315535 | |||||||
| TrEMBL | UniProtAcc | Q17400 | |||||||
| UniProt_GCRP | UniProtAcc | Q17400 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:19 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | abu | ||||||||
| Allele (12) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00057944 | ||||||||
| 00057945 | |||||||||
| 00057946 | |||||||||
| 00057947 | |||||||||
| Ortholog (26) | |||||||||
| Paralog (30) | |||||||||
| Structured_description | Concise_description | abu-1 encodes a transmembrane protein with a predicted signal sequence, a glutamine/asparagine-rich domain and multiple cysteine-rich repeats (DUF139); abu-1 expression is induced by blockage of the endoplasmic reticulum unfolded protein response, and ABU-1 may help protect the organism from damage by improperly folded nascent protein; when expressed in COS1 cells, ABU-1 localizes to the endoplasmic reticulum membrane. | Paper_evidence | WBPaper00005432 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 25 Oct 2013 00:00:00 | ||||||||
| Automated_description | Involved in endoplasmic reticulum unfolded protein response. Located in endoplasmic reticulum membrane. Expressed in pharynx. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | AC3.3 | |||||||
| Corresponding_transcript | AC3.3.1 | ||||||||
| Other_sequence | EY468455.1 | ||||||||
| ACC21420_1 | |||||||||
| CJC05164_1 | |||||||||
| Associated_feature | WBsf652988 | ||||||||
| WBsf1001106 | |||||||||
| WBsf1020303 | |||||||||
| WBsf234385 | |||||||||
| Experimental_info | RNAi_result (27) | ||||||||
| Expr_pattern | Expr2205 | ||||||||
| Expr2206 | |||||||||
| Expr2207 | |||||||||
| Expr1015645 | |||||||||
| Expr1142803 | |||||||||
| Expr2009109 | |||||||||
| Expr2027345 | |||||||||
| Drives_construct | WBCnstr00005153 | ||||||||
| WBCnstr00005158 | |||||||||
| WBCnstr00037789 | |||||||||
| Construct_product | WBCnstr00037789 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (194) | |||||||||
| Interaction (79) | |||||||||
| WBProcess | WBbiopr:00000008 | ||||||||
| WBbiopr:00000046 | |||||||||
| WBbiopr:00000079 | |||||||||
| Map_info | Map | V | Position | 2.5233 | Error | 0.001312 | |||
| Positive | Positive_clone | AC3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005432 | ||||||||
| WBPaper00006425 | |||||||||
| WBPaper00026601 | |||||||||
| WBPaper00031867 | |||||||||
| WBPaper00032003 | |||||||||
| WBPaper00037416 | |||||||||
| WBPaper00038304 | |||||||||
| WBPaper00045960 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
