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WormBase Tree Display for Gene: WBGene00128399

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Name Class

WBGene00128399SMapS_parentSequenceCjap.Contig17793
IdentityVersion2
NameCGC_nameCjp-cpn-4From_analysisInferred_from_orthology
Sequence_nameCJA09195
Molecular_nameCJA09195
CJA09195.1
JA09706
Public_nameCjp-cpn-4
SpeciesCaenorhabditis japonica
HistoryVersion_change129 Aug 2008 14:34:21WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCjp-cpn-4
229 Jul 2011 11:13:37WBPerson4055EventImportedAugustus import
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcpn
RNASeq_FPKMWBls:0000004110.206From_analysisRNASeq.japonica.WBls:0000004.control_mean
RNASeq.japonica.WBls:0000004.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002776.7416From_analysisRNASeq.japonica.WBls:0000027.control_mean
RNASeq.japonica.WBls:0000027.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003859.8828From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
67.5067From_analysisRNASeq.japonica.WBls:0000038.control_mean
RNASeq.japonica.WBls:0000038.control_median
75.1306From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:0000041102.483From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
130.292From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
74.022From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
77.8833From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
84.5605From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
89.2115From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
90.0365From_analysisRNASeq.japonica.WBls:0000041.control_median
90.8615From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
90.9199From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
92.5292From_analysisRNASeq.japonica.WBls:0000041.control_mean
WBls:000010181.7073From_analysisRNASeq.japonica.total_over_all_stages.control_mean
84.5605From_analysisRNASeq.japonica.total_over_all_stages.control_median
OrthologWBGene00000778Caenorhabditis elegansFrom_analysisTreeFam
WBGene00000780Caenorhabditis elegansFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00039390Caenorhabditis briggsaeFrom_analysisOMA
WormBase-Compara
WBGene00056029Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00064707Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00159661Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00163191Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g10369Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g14321Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g2580Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g13250Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g22831Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g15414Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g4485Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g14441Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g11874Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g15367Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g22270Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00306.g8909Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-cpn-4Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g17886Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01704.g22633Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_14843Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_001689Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10591Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g16486Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10274500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g2172Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00262529Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00291913Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00122476Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00123334Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00178953Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00131242Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00129648Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00131525Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00136626Caenorhabditis japonicaFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Smooth muscle protein/calponin; CH domain superfamily; Calponin homology domain; and Calponin homology (CH) domain. Is an ortholog of C. elegans cpn-4.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCJA09195
Corresponding_transcriptCJA09195.1
Other_sequenceName_isotig03296
BMC03824
GW915768.1
EX558781.1
CBC02950_1
JI224821.1
CR10786
Tcir_isotig04681
CR10785
Oden_isotig11134
MH08299
TDC01015_1
SR02789
FC816851.1
CRC09967_1
FE907594.1
Hbac_isotig02246
HBC02104_1
Tcol_isotig08279
ES408625.1
CB038227.1
EX564647.1
MHC05353_1
EW741509.1
TM03058
SRC01988_1
Acan_isotig04842
EX012203.1
EW742678.1
MIC01385_1
BUC01998_1
ACC07564_1
Oden_isotig11136
MI01781
Tcir_isotig04680
CJC05371_1
Acan_isotig04843
Oden_isotig28449
GRC00405_1
Oden_isotig11135
PPC08740_1
CB036338.1
Tcol_isotig08278
MI04413
Experimental_infoExpr_patternExpr1078800
Microarray_resultsGPL14145_CJA09195_268-327_0.806_9_A
MethodGene