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WormBase Tree Display for Gene: WBGene00077298

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Name Class

WBGene00077298SMapS_parentSequenceCrem_Contig25
IdentityVersion3
NameCGC_nameCre-vav-1From_analysisInferred_from_orthology
Sequence_nameCRE16749
Molecular_nameCRE16749
CRE16749.1
RP41353
Other_namecr01.sctg60.wum.64
Public_nameCre-vav-1
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 14:39:32WBPerson1847EventCreated
203 Jul 2008 11:46:53WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE16749
Other_namecr01.sctg60.wum.64
304 Jul 2008 11:06:46WBPerson4055Name_changeCGC_nameCre-vav-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvav
RNASeq_FPKMWBls:000000410.1936From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
8.24166From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
9.21763From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
WBls:000002410.1568From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510999
10.2275From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511005
10.6835From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510986
10.6904From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511004
11.1091From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510987
11.2515From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747482
11.6161From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747490
13.3259From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510992
16.3773From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510993
2.4877From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311801
3.72036From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511012
3.86065From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511018
3.97328From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510991
4.31952From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511013
4.37999From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510989
4.41507From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511015
4.58956From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510988
4.70828From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747488
4.79902From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510994
5.01007From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511011
5.07716From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511003
5.159From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511019
5.42656From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511000
5.53069From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511006
5.53258From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511001
5.59313From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511009
5.62807From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510997
5.72571From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510995
5.7857From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510998
6.12314From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747486
6.14257From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747483
6.52991From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311802
6.56684From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511020
6.66713From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747487
6.69From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511016
6.7797From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511014
6.96861From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511017
7.05632From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510996
7.11705From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511021
7.13929From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311798
7.48036From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311800
7.48791From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511007
7.73147From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511010
7.92082From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511002
8.02914From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747485
8.13005From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747489
8.14883From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511008
8.24463From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747479
8.49348From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747484
8.78259From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747481
8.8509From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311799
8.87444From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510990
9.93581From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747480
WBls:000002710.6288From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
13.6479From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
1.98649From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
8.83699From_analysisRNASeq.remanei.WBls:0000027.control_mean
9.08476From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
9.85678From_analysisRNASeq.remanei.WBls:0000027.control_median
WBls:00000381.00574From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
5.35606From_analysisRNASeq.remanei.WBls:0000038.control_mean
7.44007From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
7.62238From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
WBls:00000414.32034From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
4.59665From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
4.93654From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
5.43762From_analysisRNASeq.remanei.WBls:0000041.control_median
5.64016From_analysisRNASeq.remanei.WBls:0000041.control_mean
5.93871From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
6.61644From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
7.43228From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
WBls:00000631.85365From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
1.92287From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
0From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
3.54254From_analysisRNASeq.remanei.WBls:0000063.control_mean
3.70371From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
3.72471From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
3.98411From_analysisRNASeq.remanei.WBls:0000063.control_median
4.24352From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
4.52002From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
4.80088From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
5.28155From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
5.37453From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
WBls:00001014.86871From_analysisRNASeq.remanei.total_over_all_stages.control_median
5.35069From_analysisRNASeq.remanei.total_over_all_stages.control_mean
GO_annotation00169274
OrthologWBGene00006887Caenorhabditis elegansFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00036211Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00090011Pristionchus pacificusFrom_analysisOMA
WormBase-Compara
WBGene00163870Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00127682Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00222867Brugia malayiFrom_analysisWormBase-Compara
WBGene00239065Onchocerca volvulusFrom_analysisWormBase-Compara
CBOVI.g2595Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g8568Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g173Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g11234Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g21592Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g6173Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g15247Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12126Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g17926Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g12600Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g12947Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g15968Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g25674Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g4800Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00110.g4575Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-vav-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g13406Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00211.g7140Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_02283Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_023266Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g09040Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14544Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g23611Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g23960Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g3166Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0051400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g19712Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00264105Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00291008Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00058197Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00058198Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00058199Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00058949Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00062359Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00062415Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00065297Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00070872Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00051225Caenorhabditis remaneiFrom_analysisGeneACeDB-Compara
WBGene00051370Caenorhabditis remaneiFrom_analysisGeneACeDB-Compara
WBGene00052413Caenorhabditis remaneiFrom_analysisGeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to enable guanyl-nucleotide exchange factor activity. Is an ortholog of C. elegans vav-1. In C. elegans, vav-1 is involved in several processes, including negative regulation of Notch signaling pathway; positive regulation of nematode male tail tip morphogenesis; and regulation of vulval development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE16749
Corresponding_transcriptCRE16749.1
Other_sequenceDviv_isotig24605
FK806571.1
Oden_isotig19059
Hbac_isotig02150
ACC03528_2
FC551264.1
Acan_isotig07573
Experimental_infoExpr_patternExpr1100853
Microarray_resultsGPL14146_CRE16749_2258-2317_0.852_56_A
GPL14146_CRE16749_2535-2594_0.930_4_C
GPL14146_CRE16749_2914-2973_0.939_1_B
MethodGene