WormBase Tree Display for Gene: WBGene00060198

WBGene00060198 SMap: S_parent: Sequence: Crem_Contig24
  Identity: Version: 3
    Name: CGC_name: Cre-apm-3 From_analysis: Inferred_from_orthology
      Sequence_name: CRE17209
      Molecular_name: CRE17209
        CRE17209.1
        RP34401
      Other_name: cr01.sctg17.wum.84
      Public_name: Cre-apm-3
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:27 WBPerson1847 Event: Created
        2 29 Nov 2007 17:00:48 WBPerson2970 Name_change: CGC_name: Cre-apm-3
        3 03 Jul 2008 11:45:31 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE17209
                Other_name: cr01.sctg17.wum.84
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: apm
    RNASeq_FPKM: WBls:0000004 14.5192 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        14.5694 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        14.6196 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 0.866235 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511013
        0.916319 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511012
        10.3591 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311798
        10.8468 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747479
        11.4244 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311800
        11.9824 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510987
        12.3107 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311799
        12.3482 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510986
        12.3484 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747480
        12.3696 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311802
        1.25556 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510991
        1.33831 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511003
        13.7109 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747482
        14.2253 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511004
        1.59716 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510994
        17.1208 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510993
        18.2282 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510992
        1.85502 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511006
        1.87247 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511019
        1.94637 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510989
        1.95421 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511009
        2.01932 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511015
        22.6111 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311801
        2.32201 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511011
        2.4008 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511002
        2.45686 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511007
        2.61279 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511014
        2.8003 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511001
        3.04436 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510998
        3.04707 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511000
        3.06495 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510995
        3.24455 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747488
        3.35493 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511018
        3.35605 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510988
        3.37005 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511020
        3.50423 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747489
        4.25201 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511021
        4.30584 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747486
        4.37923 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747483
        4.42703 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510997
        4.50564 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747487
        4.5276 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510996
        4.60289 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511008
        4.71096 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510999
        5.01669 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747484
        5.17347 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511005
        5.5533 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747481
        5.70368 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511017
        5.75001 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747490
        5.82825 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511010
        5.88288 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511016
        5.9028 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510990
        6.22773 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747485
      WBls:0000027 10.0843 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        10.4162 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        13.3542 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        1.90401 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        8.85673 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        9.7525 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
      WBls:0000038 10.8865 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
        2.06568 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        7.08842 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        8.31307 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
      WBls:0000041 3.52975 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        3.85276 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        4.19094 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        4.3464 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        4.43318 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        4.67542 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        4.72567 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        5.10383 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
      WBls:0000063 1.36365 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
        1.92691 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
        1.98812 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
        0 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
        2.51768 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
        2.56951 From_analysis: RNASeq.remanei.WBls:0000063.control_median
        2.62135 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
        2.71511 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
        3.23389 From_analysis: RNASeq.remanei.WBls:0000063.control_mean
        4.51692 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
        5.0173 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
        9.67189 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
      WBls:0000101 4.35393 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        5.54801 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    GO_annotation: 00155666
      00155667
      00155668
    Ortholog: WBGene00000164 Caenorhabditis elegans From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00029947 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00146871 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00129793 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00224588 Brugia malayi From_analysis: WormBase-Compara
      WBGene00240284 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00277444 Pristionchus pacificus From_analysis: WormBase-Compara
      CBOVI.g11712 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g12174 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g10939 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g13377 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP31.g6149 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g54 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g19043 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g4241 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g11225 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00071.g3365 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-apm-3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold412.g1098 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00225.g7460 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_03174 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_022238 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g01403 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g11435 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0013320 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g18356 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00257347 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00291140 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00051839 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00055921 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00060042 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00070363 Caenorhabditis remanei From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be part of clathrin adaptor complex. Is an ortholog of C. elegans apm-3. In C. elegans, apm-3 is involved in lipid storage and lysosome organization. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE17209
    Corresponding_transcript: CRE17209.1
    Other_sequence: GR18678
      TSC01169_1
      GPC01975_1
      HGC07918_1
      FG978582.1
      PVC00709_1
      MH05144
      Dviv_isotig33517
      EX561781.1
      FC816303.1
      SRC00708_1
      ES740463.1
      GRC03707_1
      XI04438
      JI464832.1
      MJ02924
      Oden_isotig19165
      Tcol_isotig12517
      ES272925.1
      EX557275.1
      ACC21769_1
      ES740156.1
      GP02587
      MJC02251_1
      MHC01558_1
      CGC00499_1
      MH05145
      Tcir_isotig08774
      HGC06876_1
      TS03326
      Tcol_isotig21822
      EX565257.1
      Dviv_isotig24158
      ES570155.1
      HBC03413_1
      HG06730
      HBC07869_1
      Acan_isotig16563
      Hbac_isotig03773
      ACC14125_1
      HG10988
      HG00692
      EX552653.1
      Acan_isotig10856
      ES562228.1
      Name_isotig08388
      BXC01980_1
      XIC04925_1
      CGC01189_1
      MAC01622_1
      FG973405.1
      SR01956
      GR18677
      MHC10111_1
      MA02298
      CV199796.1
      Hbac_isotig04762
      EX563412.1
      EX554007.1
      FC810853.1
      FG973401.1
      JI171096.1
  Experimental_info: Expr_pattern: Expr1117583
    Microarray_results: GPL14146_CRE17209_285-344_0.821_72_C
      GPL14146_CRE17209_460-519_0.899_27_B
      GPL14146_CRE17209_586-645_0.906_23_A
  Method: Gene