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WormBase Tree Display for Gene: WBGene00029947

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Name Class

WBGene00029947SMapS_parentSequencecb25.fpc1402c
IdentityVersion2
NameCGC_nameCbr-apm-3From_analysisInferred_from_orthology
Sequence_nameCBG08084
Molecular_nameCBG08084
CBG08084.1
CBP40214
Other_nameCBG_08084Accession_evidenceNDBHE600971
Public_nameCbr-apm-3
DB_infoDatabaseNDBlocus_tagCBG_08084
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-apm-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classapm
RNASeq_FPKMWBls:000000210.7254From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
5.04067From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
7.90455From_analysisRNASeq.briggsae.WBls:0000002.control_mean
7.94759From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
6.07646From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
7.01202From_analysisRNASeq.briggsae.WBls:0000002.control_median
7.44753From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000327.5131From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
34.5026From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
41.4921From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
28.7576From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
32.5876From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000463.2229From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
64.3049From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
65.387From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
61.7566From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
62.5372From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
65.3469From_analysisRNASeq.briggsae.WBls:0000004.control_mean
73.8306From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.527648From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.939717From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
19.6673From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
7.04489From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.70057From_analysisRNASeq.briggsae.WBls:0000027.control_median
6.46142From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
6.89902From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000358.95899From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.116From_analysisRNASeq.briggsae.WBls:0000038.control_mean
1.27993From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
25.5279From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
6.28803From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
6.82819From_analysisRNASeq.briggsae.WBls:0000038.control_median
7.36835From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000413.74717From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
5.98592From_analysisRNASeq.briggsae.WBls:0000041.control_mean
6.41674From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
6.52975From_analysisRNASeq.briggsae.WBls:0000041.control_median
6.64275From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
7.137From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
3.85644From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
4.90915From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
5.45154From_analysisRNASeq.briggsae.WBls:0000041.control_mean
5.66294From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.56867From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
2.85097From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.44335From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
3.89647From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
4.34637From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
3.30602From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.66991From_analysisRNASeq.briggsae.WBls:0000063.control_median
5.58124From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010113.4757From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
7.137From_analysisRNASeq.briggsae.total_over_all_stages.control_median
16.9621From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
6.88987From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00133359
00133360
00133361
Ortholog (28)
ParalogWBGene00030469Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033291Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034945Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038645Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be part of clathrin adaptor complex. Is an ortholog of C. elegans apm-3. In C. elegans, apm-3 is involved in lipid storage and lysosome organization.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG08084
Corresponding_CDS_historyCBG08084:bp194
CBG08084:bp255
Corresponding_transcriptCBG08084.1
Other_sequence (62)
Experimental_infoExpr_patternExpr1065280
Microarray_resultsGPL8303_CB6_WBGene00029947_A
GPL8303_CB6_WBGene00029947_B
GPL14143_CBG08084_259-318_0.779_32_C
GPL14143_CBG08084_410-469_0.813_10_B
GPL14143_CBG08084_541-600_0.832_8_A
MethodGene