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WormBase Tree Display for Gene: WBGene00039786

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Name Class

WBGene00039786SMapS_parentSequencecb25.fpc4206c
IdentityVersion3
NameSequence_nameCBG20875
Molecular_nameCBG20875
CBG20875.1
CBP11597
Other_nameCBG_20875Accession_evidenceNDBHE600928
Public_nameCBG20875
DB_infoDatabaseNDBlocus_tagCBG_20875
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
205 Nov 2014 11:21:50WBPerson2970Name_changeCGC_nameCbr-spch-3
320 Mar 2018 10:26:13WBPerson4025Name_changeCGC_nameRemoved
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:000000229.1107From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
38.9319From_analysisRNASeq.briggsae.WBls:0000002.control_mean
39.7128From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
47.9723From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
41.1752From_analysisRNASeq.briggsae.WBls:0000002.control_mean
43.8089From_analysisRNASeq.briggsae.WBls:0000002.control_median
47.905From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000030From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.347837From_analysisRNASeq.briggsae.WBls:0000003.control_mean
1.04351From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:00000240From_analysis (12)
WBls:00000270.756453From_analysisRNASeq.briggsae.WBls:0000027.control_mean
0From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
2.26936From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
0.56734From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000350From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038103.066From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
201.005From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
3.43302From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
53.2495From_analysisRNASeq.briggsae.WBls:0000038.control_median
76.876From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:00000410.052017From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.057941From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.278422From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.498902From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2303.27From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
575.97From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1669.25From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
2014.59From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
834.875From_analysisRNASeq.briggsae.WBls:0000041.control_median
997.953From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:00000631338.19From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
603.193From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
603.763From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
608.626From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
630.26From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
756.806From_analysisRNASeq.briggsae.WBls:0000063.control_mean
340.045From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
606.195From_analysisRNASeq.briggsae.WBls:0000063.control_median
687.346From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001010.057941From_analysisRNASeq.briggsae.total_over_all_stages.control_median
224.637From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.278422From_analysisRNASeq.briggsae.total_over_all_stages.control_median
278.613From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
OrthologWBGene00007307Caenorhabditis elegansFrom_analysisOMA
WBGene00015689Caenorhabditis elegansFrom_analysisOMA
WBGene00020840Caenorhabditis elegansFrom_analysisOMA
WBGene00085827Caenorhabditis remaneiFrom_analysisOMA
WBGene00143838Caenorhabditis brenneriFrom_analysisOMA
WBGene00160522Caenorhabditis brenneriFrom_analysisOMA
CSP26.g3850Caenorhabditis zanzibariFrom_analysisWormBase-Compara
Cnig_chr_II.g6821Caenorhabditis nigoniFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs an ortholog of C. elegans spch-1; spch-2; and spch-3. In C. elegans, spch-1 is involved in male meiotic nuclear division.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG20875
Corresponding_CDS_historyCBG20875:bp194
Corresponding_transcriptCBG20875.1
Other_sequenceCBC01763_1
CR02215
CBC09724_1
CRC00384_1
FD516897.1
CSC01383_1
FD516842.1
Experimental_infoExpr_patternExpr1068597
Microarray_resultsGPL8303_CB6_WBGene00039786_A
GPL8303_CB6_WBGene00039786_B
GPL14143_CBG20875_460-519_0.898_1_A
Remark[180319 gw3] The CGC name Cbr-spch-3 was deleted as there was no evidence to support it.Curator_confirmedWBPerson4025
MethodGene