WormBase Tree Display for Gene: WBGene00030791

WBGene00030791 SMap: S_parent: Sequence: cb25.fpc2193
  Identity: Version: 2
    Name: CGC_name: Cbr-lgc-50 From_analysis: Inferred_from_orthology
      Sequence_name: CBG09141
      Molecular_name: CBG09141
        CBG09141.1
        CBP45058
      Other_name: CBG_09141 Accession_evidence: NDB HE601302
      Public_name: Cbr-lgc-50
    DB_info: Database: NDB locus_tag CBG_09141
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:00 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 21 Apr 2008 17:10:50 WBPerson2970 Name_change: CGC_name: Cbr-lgc-50
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lgc
    RNASeq_FPKM: WBls:0000002 10.169 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        7.2651 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        8.56189 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        8.66533 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        2.9807 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        7.24417 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        7.9135 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
      WBls:0000003 0.267356 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.534713 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        0.729301 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        1.65319 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 0.392713 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        0.820131 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        1.24755 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        0.27128 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        0.808833 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.923913 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        1.20871 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 13.1263 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
        16.0875 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
        18.2342 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
        18.7502 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        19.3597 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
        21.1254 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        22.8911 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        26.3037 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
        6.44631 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
        13.1318 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
        19.9841 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
        21.4958 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
      WBls:0000027 0.449011 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        3.09179 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        3.88441 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        8.11244 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        14.0898 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        5.60212 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        6.43576 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 12.8944 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 10.3482 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        11.1423 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        13.2098 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        1.65083 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        17.4572 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        9.07481 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 11.8604 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        2.082 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        2.42852 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        2.7632 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        3.09788 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        4.8672 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        11.8577 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        12.0296 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        7.22602 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        7.47779 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
      WBls:0000063 2.89224 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        3.51442 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        4.03277 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        4.26548 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        5.35046 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        5.53753 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        4.39816 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        4.54715 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        5.06153 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 5.35046 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        7.23822 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        4.54715 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        6.8417 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00134205
      00134206
      00134207
      00134208
      00134209
      00134210
    Contained_in_operon: CBOPA0321
    Ortholog: WBGene00020605 Caenorhabditis elegans From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00107430 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
      WBGene00194461 Caenorhabditis brenneri From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00066749 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00125919 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g5254 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g12581 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4002 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1108 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g12817 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g10997 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g10569 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g19 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g3551 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g20174 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00139.g5390 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-lgc-50 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g12603 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01387.g20578 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_22442 Caenorhabditis latens From_analysis: WormBase-Compara
      FL83_22443 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_009037 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08352 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g6829 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30051400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00226120 Brugia malayi From_analysis: WormBase-Compara
      chrIII_pilon.g8159 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00244812 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00261511 Strongyloides ratti From_analysis: WormBase-Compara
    Paralog: WBGene00023750 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00024072 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00024359 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00024485 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00024487 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00024689 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00024720 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00024721 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00024816 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00024845 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00025000 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00025067 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00025242 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00025402 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00025608 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00025711 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00025881 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00025975 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00026192 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00026681 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027089 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027889 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027890 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027976 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00028865 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00028900 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00028929 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00028969 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029209 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029397 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029459 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029484 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029988 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00030804 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00030982 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00031802 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00031803 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032130 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032131 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032274 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032807 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032847 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033111 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033246 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033345 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033378 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033600 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033800 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033914 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034198 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034435 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034444 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034644 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034869 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034995 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035214 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035453 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035531 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035620 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035884 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035885 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036032 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036209 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036229 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036241 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036242 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036300 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036418 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036579 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036931 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036943 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036969 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037805 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037846 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037974 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037983 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00038316 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00038367 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00038401 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00039464 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00039476 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00039891 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00039930 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00040158 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00040276 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00040442 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041064 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041542 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041559 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041596 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041597 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041671 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041942 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042017 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042167 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042282 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042775 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042899 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00088409 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00270414 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00271497 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00271498 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00303210 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00303211 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans lgc-50. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG09141
    Corresponding_CDS_history: CBG09141:bp194
      CBG09141:bp255
    Corresponding_transcript: CBG09141.1
    Other_sequence: ACC07374_1
      Hbac_isotig05586
      FG351540.1
      PPC02239_1
      EY469961.1
      FG588567.1
      MIC01484_1
      MHC03782_1
      MA02726
      MH07824
      FG351890.1
      FG587622.1
      FG353397.1
      Acan_isotig08221
      Dviv_isotig25986
      PP02051
      MAC02297_1
      MI01761
      MI04377
      EY466181.1
      Tcol_isotig16630
  Experimental_info: Expr_pattern: Expr1056571
    Microarray_results: GPL8303_CB6_WBGene00030791_A
      GPL14143_CBG09141_243-302_0.868_22_B
      GPL14143_CBG09141_456-515_0.842_35_A
      GPL14143_CBG09141_909-968_0.874_18_C
  Method: Gene