WormBase Tree Display for Gene: WBGene00030647

WBGene00030647 SMap: S_parent: Sequence: cb25.fpc2187
  Identity: Version: 4
    Name: CGC_name: Cbr-bas-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG08967
      Molecular_name: CBG08967
        CBG08967.1
        CBP02225
      Other_name: CBG_08967 Accession_evidence: NDB HE601284
        Cbr-basl-1 From_analysis: Inferred_from_orthology
      Public_name: Cbr-bas-1
    DB_info: Database: NDB locus_tag CBG_08967
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:00 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-bas-1
        3 02 Mar 2012 16:44:51 WBPerson2970 Name_change: CGC_name: Cbr-basl-1
                Other_name: Cbr-bas-1
        4 20 Mar 2018 10:26:12 WBPerson4025 Name_change: CGC_name: Cbr-bas-1
                Other_name: Cbr-basl-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: bas
    Allele: WBVar00043767
      WBVar00043737
      WBVar00043752
      WBVar00043727
      WBVar00043772
      WBVar00043757
      WBVar00043742
      WBVar00043732
      WBVar00043762
      WBVar00043747
    RNASeq_FPKM: WBls:0000002 13.5956 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        17.2129 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        18.822 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        19.221 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        14.2794 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        16.2088 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        5.47879 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 0.629061 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        0.943856 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        1.25865 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        0.972977 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        1.03122 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 4.8842 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        5.28693 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        5.68967 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        4.59577 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        4.94977 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        5.27252 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        6.2432 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 1.03905 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        22.0908 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        3.08607 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        8.73864 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        12.4343 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        12.5884 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        23.5214 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 24.3493 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 12.1736 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        17.9864 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        21.7197 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        21.722 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        25.4577 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        31.2612 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 12.5093 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        12.9205 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        13.213 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        13.5056 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        13.8912 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        16.6294 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        11.411 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        13.4969 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        14.0058 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 10.804 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        11.716 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        13.6733 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        15.08 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        15.656 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        23.5505 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        14.6646 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        15.9473 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        20.2841 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 13.6733 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        15.261 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        13.5506 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        14.055 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00134025
      00134026
      00134027
      00134028
      00134029
    Ortholog (39)
    Paralog: WBGene00024028 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00028506 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00031909 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034615 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035897 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036903 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037453 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00038467 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042089 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable carboxy-lyase activity and pyridoxal phosphate binding activity. Predicted to be involved in amino acid metabolic process. Is an ortholog of C. elegans bas-1. In C. elegans, bas-1 is involved in several processes, including locomotion involved in locomotory behavior; phenol-containing compound biosynthetic process; and reproductive behavior. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG08967
    Corresponding_CDS_history: CBG08967:bp194
    Corresponding_transcript: CBG08967.1
    Other_sequence (44)
  Experimental_info: Expr_pattern: Expr1050245
    Microarray_results: GPL8303_CB6_WBGene00030647_A
      GPL8303_CB6_WBGene00030647_B
      GPL14143_CBG08967_1007-1066_0.909_9_C
      GPL14143_CBG08967_1077-1136_0.938_3_B
      GPL14143_CBG08967_1288-1347_0.877_20_A
  Method: Gene