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WormBase Tree Display for Gene: WBGene00042089

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Name Class

WBGene00042089SMapS_parentSequencecb25.NA_050
IdentityVersion3
NameSequence_nameCBG23831
Molecular_nameCBG23831
CBG23831.1
CBP37927
Other_nameCBG_23831Accession_evidenceNDBHE601053
Public_nameCBG23831
DB_infoDatabaseNDBlocus_tagCBG_23831
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:12WBPerson1971EventImportedInitial conversion from brigace
201 Oct 2019 10:47:49WBPerson1983Name_changeCGC_nameCbr-spl-3.1
327 Nov 2019 12:48:15WBPerson1983Name_changeCGC_nameRemoved
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:000000218.3369From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
20.0821From_analysisRNASeq.briggsae.WBls:0000002.control_mean
32.2992From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
9.61023From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
17.8233From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
18.0801From_analysisRNASeq.briggsae.WBls:0000002.control_median
19.5174From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000320.7301From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
21.0671From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
21.4041From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
14.5803From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
18.9048From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000410.3494From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
11.0312From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
11.7131From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
11.9268From_analysisRNASeq.briggsae.WBls:0000004.control_mean
13.5431From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
18.7855From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
5.24288From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002718.1158From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2.76036From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
5.19448From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
8.69021From_analysisRNASeq.briggsae.WBls:0000027.control_mean
11.6551From_analysisRNASeq.briggsae.WBls:0000027.control_median
12.1586From_analysisRNASeq.briggsae.WBls:0000027.control_mean
22.5638From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003520.0185From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003811.6909From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
20.3716From_analysisRNASeq.briggsae.WBls:0000038.control_mean
21.3831From_analysisRNASeq.briggsae.WBls:0000038.control_median
31.0753From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
32.1477From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
6.57249From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004125.6414From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
27.9894From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
28.8652From_analysisRNASeq.briggsae.WBls:0000041.control_mean
28.9261From_analysisRNASeq.briggsae.WBls:0000041.control_median
29.8628From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
31.9674From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
24.3795From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
27.4189From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
27.7041From_analysisRNASeq.briggsae.WBls:0000041.control_median
27.8766From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:000006310.5433From_analysisRNASeq.briggsae.WBls:0000063.control_mean
12.0507From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
12.8583From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
15.176From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
5.15961From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
7.47168From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
12.1146From_analysisRNASeq.briggsae.WBls:0000063.control_mean
12.4545From_analysisRNASeq.briggsae.WBls:0000063.control_median
19.9716From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010117.0719From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
18.1158From_analysisRNASeq.briggsae.total_over_all_stages.control_median
17.3525From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
18.2264From_analysisRNASeq.briggsae.total_over_all_stages.control_median
Ortholog (22)
ParalogWBGene00024028Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028506Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030647Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031909Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034615Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035897Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036903Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037453Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038467Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Pyridoxal phosphate-dependent transferase, major domain; Pyridoxal phosphate-dependent transferase; and Pyridoxal phosphate-dependent transferase, small domain. Is an ortholog of C. elegans spl-3.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG23831
Corresponding_CDS_historyCBG23831:bp194
Corresponding_transcriptCBG23831.1
Other_sequenceDviv_isotig09464
FC542549.1
Hbac_isotig06404
Experimental_infoExpr_patternExpr1065553
Microarray_resultsGPL8303_CB6_WBGene00034615_B
GPL8303_CB6_WBGene00042089_A
GPL14143_CBG13938_484-543_0.789_16_C
GPL14143_CBG13938_724-783_0.474_84_A
GPL14143_CBG23831_66-125_0.747_13_A
Remark[191127 pad] The CGC name Cbr-spl-3.1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene