WormBase Tree Display for Gene: WBGene00037453

WBGene00037453 SMap: S_parent: Sequence: cb25.fpc4079a
  Identity: Version: 3
    Name: CGC_name: Cbr-hdl-2 From_analysis: Inferred_from_orthology
      Sequence_name: CBG17950
      Molecular_name: CBG17950
        CBG17950.1
        CBP39697
      Other_name: Cbr-tag-19 From_analysis: Inferred_from_orthology
        CBG_17950 Accession_evidence: NDB HE600963
      Public_name: Cbr-hdl-2
    DB_info: Database: NDB locus_tag CBG_17950
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:07 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-tag-19
        3 02 Mar 2012 16:44:52 WBPerson2970 Name_change: CGC_name: Cbr-hdl-2
                Other_name: Cbr-tag-19
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hdl
    RNASeq_FPKM: WBls:0000002 0.3083 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        0.435324 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        0.592095 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        1.03266 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        0.395643 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        0.415484 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        0.542982 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0.248419 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        0.436922 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.625424 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        0.316677 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        0.39684 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 0.199746 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        0.456849 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        0.713952 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        0.3039 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        0.325328 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        0.400386 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.459003 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 0.081703 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        0.10035 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        0.118998 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
        0.142775 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        0.370397 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
        0.212562 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
        0.628953 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
      WBls:0000027 0.018346 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        0.055037 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        0 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.027519 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        0.035013 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        0.085016 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 0.094946 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.052293 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        0.070067 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        0.135581 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        0.201094 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        0.944886 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        3.45609 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 0.191093 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        0.313801 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        0.331672 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.349542 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        29.809 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        7.66586 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        15.0408 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        15.9714 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        29.732 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        35.4327 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 10.9262 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        5.75519 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        6.46126 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        6.77932 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        6.90699 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        7.36579 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        1.94246 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        6.4619 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        6.62029 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
      WBls:0000101 0.3083 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        2.60541 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        0.321003 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        3.80394 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00140872
      00140873
      00140874
      00140875
      00140876
    Ortholog (25)
    Paralog: WBGene00024028 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00028506 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00030647 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00031909 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034615 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035897 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036903 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00038467 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042089 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable carboxy-lyase activity and pyridoxal phosphate binding activity. Predicted to be involved in amino acid metabolic process. Is an ortholog of C. elegans hdl-2. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG17950
    Corresponding_CDS_history: CBG17950:bp194
      CBG17950:bp255
    Corresponding_transcript: CBG17950.1
  Experimental_info: Expr_pattern: Expr1068533
    Microarray_results: GPL8303_CB6_WBGene00037453_A
      GPL14143_CBG17950_1235-1294_0.882_26_B
      GPL14143_CBG17950_1337-1396_0.922_8_C
      GPL14143_CBG17950_1532-1591_0.943_1_A
  Method: Gene