WormBase Tree Display for Gene: WBGene00019212
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| WBGene00019212 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | zmp-2 | Paper_evidence | WBPaper00036427 | |||||
| Person_evidence | WBPerson345 | ||||||||
| Sequence_name | H19M22.3 | ||||||||
| Molecular_name | H19M22.3a | ||||||||
| H19M22.3a.1 | |||||||||
| CE26937 | |||||||||
| H19M22.3b | |||||||||
| CE29414 | |||||||||
| H19M22.3c | |||||||||
| CE34904 | |||||||||
| H19M22.3b.1 | |||||||||
| H19M22.3c.1 | |||||||||
| Other_name | H19M22.d | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_H19M22.3 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | zmp-2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 04 Jan 2016 15:29:00 | WBPerson2970 | Name_change | CGC_name | zmp-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | zmp | ||||||||
| Allele (124) | |||||||||
| Strain | WBStrain00037176 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (35) | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00006987 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00010423 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00010524 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012185 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012364 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00016283 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020646 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00194737 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enables metallopeptidase activity. Involved in several processes, including determination of adult lifespan; regulation of metabolic process; and regulation of transport. Predicted to be located in extracellular space. Expressed in several structures, including anal region; body wall musculature; gonad; tail; and vulval muscle. Is an ortholog of human MMP23B (matrix metallopeptidase 23B). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | H19M22.3a | |||||||
| H19M22.3b | |||||||||
| H19M22.3c | |||||||||
| Corresponding_CDS_history | H19M22.3c:wp102 | ||||||||
| Corresponding_transcript | H19M22.3a.1 | ||||||||
| H19M22.3b.1 | |||||||||
| H19M22.3c.1 | |||||||||
| Other_sequence | ES410999.1 | ||||||||
| HBC16994_1 | |||||||||
| ES741150.1 | |||||||||
| Oden_isotig18663 | |||||||||
| ES741502.1 | |||||||||
| Hbac_isotig03769 | |||||||||
| ES414231.1 | |||||||||
| HBC20979_1 | |||||||||
| HBC20714_1 | |||||||||
| Associated_feature (23) | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Expr12840 | ||||||||
| Expr14541 | |||||||||
| Expr1010946 | |||||||||
| Expr1038297 | |||||||||
| Expr1153160 | |||||||||
| Expr2018179 | |||||||||
| Expr2036316 | |||||||||
| Drives_construct | WBCnstr00022895 | ||||||||
| WBCnstr00025989 | |||||||||
| WBCnstr00040500 | |||||||||
| Construct_product | WBCnstr00025989 | ||||||||
| WBCnstr00040500 | |||||||||
| Microarray_results (44) | |||||||||
| Expression_cluster (195) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Map | III | Position | -11.0439 | |||||
| Positive | Positive_clone | H19M22 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00036427 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056095 | |||||||||
| WBPaper00060786 | |||||||||
| WBPaper00061662 | |||||||||
| WBPaper00061665 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
