WormBase Tree Display for Gene: WBGene00018237
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WBGene00018237 | SMap | S_parent | Sequence | F40F4 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||
Name | CGC_name | irg-7 | Person_evidence | WBPerson2281 | |||
Sequence_name | F40F4.6 | ||||||
Molecular_name | F40F4.6a | ||||||
F40F4.6a.1 | |||||||
CE47861 | |||||||
F40F4.6b | |||||||
CE51544 | |||||||
F40F4.6b.1 | |||||||
Other_name | drd-2 | Person_evidence | WBPerson10050 | ||||
upr-1 | Paper_evidence | WBPaper00005036 | |||||
CELE_F40F4.6 | Accession_evidence | NDB | BX284606 | ||||
Public_name | irg-7 | ||||||
DB_info | Database | AceView | gene | XD856 | |||
WormQTL | gene | WBGene00018237 | |||||
WormFlux | gene | WBGene00018237 | |||||
NDB | locus_tag | CELE_F40F4.6 | |||||
Panther | gene | CAEEL|WormBase=WBGene00018237|UniProtKB=A0A131MBU3 | |||||
family | PTHR47324 | ||||||
NCBI | gene | 180613 | |||||
RefSeq | protein | NM_076151.7 | |||||
NM_001374988.3 | |||||||
SwissProt | UniProtAcc | A0A131MBU3 | |||||
UniProt_GCRP | UniProtAcc | A0A131MBU3 | |||||
Species | Caenorhabditis elegans | ||||||
History (2) | |||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | irg | ||||||
Allele (123) | |||||||
Strain | WBStrain00034060 | ||||||
WBStrain00033362 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00002106 | ||||||
00002107 | |||||||
00002108 | |||||||
00002109 | |||||||
00002110 | |||||||
Ortholog (24) | |||||||
Paralog | WBGene00007340 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WBGene00011182 | |||||||
WBGene00012018 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WBGene00014666 | |||||||
WBGene00017892 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||
WormBase-Compara | |||||||
WBGene00022858 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WBGene00021233 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WBGene00019957 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WBGene00006498 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Automated_description | Predicted to enable carbohydrate binding activity. Predicted to be involved in innate immune response. Predicted to be located in extracellular region. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed (2) | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F40F4.6a | |||||
F40F4.6b | |||||||
Corresponding_transcript | F40F4.6a.1 | ||||||
F40F4.6b.1 | |||||||
Other_sequence | CBC00314_1 | ||||||
EX910110.1 | |||||||
HBC00153_1 | |||||||
CGC01004_1 | |||||||
CJC01118_1 | |||||||
CRC00640_1 | |||||||
CJC02416_1 | |||||||
CBC10277_1 | |||||||
Associated_feature (4) | |||||||
Experimental_info | RNAi_result | WBRNAi00032034 | Inferred_automatically | RNAi_primary | |||
WBRNAi00027328 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00068256 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00014660 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00025454 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00067931 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00000618 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00046869 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr13277 | ||||||
Expr1017223 | |||||||
Expr1037853 | |||||||
Expr1150735 | |||||||
Expr2012822 | |||||||
Expr2031060 | |||||||
Drives_construct | WBCnstr00026675 | ||||||
Construct_product | WBCnstr00026675 | ||||||
Microarray_results (16) | |||||||
Expression_cluster (246) | |||||||
Interaction (81) | |||||||
Map_info | Map | X | Position | -10.703 | |||
Positive | Positive_clone | F40F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00005036 | ||||||
WBPaper00031686 | |||||||
WBPaper00042060 | |||||||
WBPaper00044557 | |||||||
WBPaper00047450 | |||||||
WBPaper00050776 | |||||||
WBPaper00053423 | |||||||
WBPaper00058665 | |||||||
WBPaper00061984 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |