WormBase Tree Display for Gene: WBGene00017892
expand all nodes | collapse all nodes | view schema
WBGene00017892 | SMap | S_parent | Sequence | F28B4 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Allele (87) | ||||||
RNASeq_FPKM (74) | ||||||
Ortholog (31) | ||||||
Paralog | WBGene00007340 | Caenorhabditis elegans | From_analysis | TreeFam | ||
WBGene00012018 | Caenorhabditis elegans | From_analysis | Panther | |||
WBGene00018237 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||
WormBase-Compara | ||||||
WBGene00022858 | Caenorhabditis elegans | From_analysis | Panther | |||
WBGene00021233 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WBGene00019957 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WBGene00006498 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
Structured_description | Automated_description | Enriched in AFD; PLM; RMED; intestine; and pharyngeal muscle cell based on tiling array; RNA-seq; single-cell RNA-seq; and proteomic studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; proteomic; and RNA-seq studies. Is affected by twenty-three chemicals including rotenone; manganese chloride; and mianserin based on RNA-seq; microarray; and proteomic studies. Is predicted to encode a protein with the following domains: von Willebrand factor, type A; C-type lectin fold; von Willebrand factor type A domain; von Willebrand factor A-like domain superfamily; C-type lectin-like/link domain superfamily; Lectin C-type domain; EGF-like domain; Phosphorylation site; MD domain; and C-type lectin-like. | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | F28B4.3 | ||||
Corresponding_transcript | F28B4.3.1 | |||||
Other_sequence | CR08180 | |||||
CSC00458_1 | ||||||
CR05396 | ||||||
CJC18212_1 | ||||||
CR08402 | ||||||
CRC10450_1 | ||||||
Tcol_isotig10776 | ||||||
FD517090.1 | ||||||
CGC01494_1 | ||||||
Associated_feature | WBsf653819 | |||||
WBsf1004563 | ||||||
WBsf1004564 | ||||||
WBsf1022590 | ||||||
WBsf237160 | ||||||
Experimental_info | RNAi_result | WBRNAi00098170 | Inferred_automatically | RNAi_primary | ||
WBRNAi00045796 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00014031 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00031513 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00002129 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr1017501 | |||||
Expr1037692 | ||||||
Expr1149708 | ||||||
Expr2003092 | ||||||
Expr2021306 | ||||||
Drives_construct | WBCnstr00015934 | |||||
WBCnstr00026936 | ||||||
Construct_product | WBCnstr00026936 | |||||
Microarray_results (17) | ||||||
Expression_cluster (264) | ||||||
Interaction (84) | ||||||
Map_info | Positive | Positive_clone | F28B4 | Inferred_automatically | From sequence, transcript, pseudogene data | |
Interpolated_map_position | X | -10.7178 | ||||
Reference (4) | ||||||
Method | Gene |