WormBase Tree Display for Gene: WBGene00017648
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| WBGene00017648 | SMap | S_parent | Sequence | F20H11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ddo-3 | Person_evidence | WBPerson11473 | |||||
| Sequence_name | F20H11.5 | ||||||||
| Molecular_name | F20H11.5 | ||||||||
| F20H11.5.1 | |||||||||
| CE09514 | |||||||||
| Other_name | CELE_F20H11.5 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | ddo-3 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 30 Apr 2010 10:19:37 | WBPerson2970 | Name_change | CGC_name | ddo-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ddo | ||||||||
| Allele (25) | |||||||||
| Strain | WBStrain00002837 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00008127 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00014921 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| WBGene00017565 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022076 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ddo-3 encodes a secreted D-aspartate oxidase (DASPO), paralogous to DDO-1 and DDO-2; recombinant DDO-3 protein exhibits DDO activity in a FAD-dependent manner; DDO-3 is secreted to the oocyte surface, uterine space, seminal fluid and coelomocytes in a signal peptide-dependent manner; ddo-3 is involved in D-glutamate and L-tryptophan metabolism, self-fertility, hatching, nose touch response and lifespan; ddo-3 is expressed in a head mesodermal cell, hypodermis, other head cells, and vulva. | Paper_evidence | WBPaper00006525 | |||||
| WBPaper00028859 | |||||||||
| WBPaper00036387 | |||||||||
| WBPaper00040844 | |||||||||
| WBPaper00055548 | |||||||||
| Person_evidence | WBPerson11867 | ||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 29 Aug 2019 00:00:00 | ||||||||
| Automated_description | Predicted to enable D-amino-acid oxidase activity. Predicted to be involved in D-amino acid catabolic process. Predicted to be located in cytoplasm. Expressed in several structures, including coelomocyte; eggshell; excretory socket cell; non-striated muscle; and seminal vesicle. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F20H11.5 | |||||||
| Corresponding_transcript | F20H11.5.1 | ||||||||
| Other_sequence | HC03120 | ||||||||
| CR02135 | |||||||||
| CRC03304_1 | |||||||||
| Associated_feature | WBsf992801 | ||||||||
| WBsf225127 | |||||||||
| WBsf225128 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00031191 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00045144 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013989 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013647 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006550 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045150 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00003358 | ||||||||
| WBCnstr00003359 | |||||||||
| WBCnstr00014993 | |||||||||
| WBCnstr00027132 | |||||||||
| WBCnstr00040512 | |||||||||
| WBCnstr00040513 | |||||||||
| Construct_product | WBCnstr00027132 | ||||||||
| WBCnstr00040513 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (222) | |||||||||
| Interaction (201) | |||||||||
| Map_info | Map | III | Position | -1.06191 | Error | 0.000479 | |||
| Positive | Positive_clone | F20H11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028859 | ||||||||
| WBPaper00036387 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040844 | |||||||||
| WBPaper00043127 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00055548 | |||||||||
| WBPaper00059638 | |||||||||
| WBPaper00065140 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
