WormBase Tree Display for Gene: WBGene00022076
expand all nodes | collapse all nodes | view schema
| WBGene00022076 | SMap | S_parent | Sequence | Y69A2AR | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | daao-1 | Person_evidence | WBPerson11473 | |||||
| Sequence_name | Y69A2AR.5 | ||||||||
| Molecular_name | Y69A2AR.5 | ||||||||
| Y69A2AR.5.1 | |||||||||
| CE36371 | |||||||||
| Other_name | CELE_Y69A2AR.5 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | daao-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 29 Apr 2010 16:21:40 | WBPerson2970 | Name_change | CGC_name | daao-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | daao | ||||||||
| Allele (82) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00008127 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017565 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017648 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | daao-1 encodes a D-amino acid oxidase (DAAO); recombinant DAOO-1 has DAAO activity on neutral and basic D-amino acid substrates (e.g., D-alanine or D-methionine, and D-arginine), with highest catalytic efficiency on D-arginine; since the C-terminal residues of DAAO-1 match the PTS1 consensus sequence, DAAO-1 is predicted to be peroxisomal. | Paper_evidence | WBPaper00028859 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 25 May 2010 00:00:00 | ||||||||
| Automated_description | Enables D-amino-acid oxidase activity. Involved in obsolete oxidation-reduction process. Predicted to be located in cytoplasm. Expressed in intestinal cell. Human ortholog(s) of this gene implicated in schizophrenia. Is an ortholog of human DDO (D-aspartate oxidase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:5419 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2671) | ||||
| Molecular_info | Corresponding_CDS | Y69A2AR.5 | |||||||
| Corresponding_transcript | Y69A2AR.5.1 | ||||||||
| Other_sequence | ASC01246_1 | ||||||||
| JI225847.1 | |||||||||
| Tcir_isotig12739 | |||||||||
| CBC04024_1 | |||||||||
| Associated_feature | WBsf645842 | ||||||||
| WBsf995728 | |||||||||
| WBsf228037 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00021313 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00058054 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9985 | ||||||||
| Expr1017865 | |||||||||
| Expr1161471 | |||||||||
| Expr2010756 | |||||||||
| Expr2028993 | |||||||||
| Drives_construct | WBCnstr00014989 | ||||||||
| WBCnstr00024352 | |||||||||
| Construct_product | WBCnstr00024352 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (199) | |||||||||
| Interaction | WBInteraction000114308 | ||||||||
| Map_info | Map | IV | Position | -6.99235 | Error | 0.026989 | |||
| Positive | Positive_clone | Y69A2AR | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028859 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040844 | |||||||||
| WBPaper00051709 | |||||||||
| WBPaper00053154 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060161 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
