WormBase Tree Display for Gene: WBGene00017565
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| WBGene00017565 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ddo-2 | Person_evidence | WBPerson11473 | |||||
| Sequence_name | F18E3.7 | ||||||||
| Molecular_name | F18E3.7a | ||||||||
| F18E3.7a.1 | |||||||||
| CE07083 | |||||||||
| F18E3.7a.2 | |||||||||
| F18E3.7b | |||||||||
| Other_name | CELE_F18E3.7 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | ddo-2 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 30 Apr 2010 10:18:31 | WBPerson2970 | Name_change | CGC_name | ddo-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ddo | ||||||||
| Allele (39) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00008127 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00022076 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017648 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ddo-2 encodes a D-aspartate oxidase (DASPO), paralogous to DDO-1 and DDO-3; recombinant DDO-2 protein has DASPO acvitity on acidic D-amino acid substrates (e.g., D-aspartate, D-glutamate, or N-methyl-D-aspartate/NMDA), with highest catalytic efficiency on D-aspartate or D-glutamate; ddo-2 is required for viability in mass RNAi assays. | Paper_evidence | WBPaper00004651 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00025054 | |||||||||
| WBPaper00028859 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 25 May 2010 00:00:00 | ||||||||
| Automated_description | Enables D-aspartate oxidase activity and D-glutamate oxidase activity. Involved in aspartate catabolic process and obsolete oxidation-reduction process. Predicted to be located in cytoplasm. Expressed in body wall musculature; intestinal cell; and pharyngeal muscle cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F18E3.7a | |||||||
| Corresponding_CDS_history | F18E3.7b:wp252 | ||||||||
| Corresponding_transcript | F18E3.7b | ||||||||
| F18E3.7a.1 | |||||||||
| F18E3.7a.2 | |||||||||
| Other_sequence (33) | |||||||||
| Associated_feature | WBsf652776 | ||||||||
| WBsf233948 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00013514 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00044952 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002304 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9987 | ||||||||
| Expr1027748 | |||||||||
| Expr1037543 | |||||||||
| Expr1148923 | |||||||||
| Expr2010829 | |||||||||
| Expr2029067 | |||||||||
| Drives_construct | WBCnstr00014992 | ||||||||
| WBCnstr00027201 | |||||||||
| Construct_product | WBCnstr00027201 | ||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (252) | |||||||||
| Interaction (38) | |||||||||
| Map_info | Map | V | Position | 0.750253 | Error | 0.000215 | |||
| Positive | Positive_clone | F18E3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028859 | ||||||||
| WBPaper00036387 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040844 | |||||||||
| WBPaper00043127 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059638 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
