WormBase Tree Display for Gene: WBGene00016497
expand all nodes | collapse all nodes | view schema
WBGene00016497 | SMap | S_parent | Sequence | C37C3 | ||||||
---|---|---|---|---|---|---|---|---|---|---|
Identity | Version | 4 | ||||||||
Name | CGC_name | vps-32.2 | Person_evidence | WBPerson1763 | ||||||
Sequence_name | C37C3.3 | |||||||||
Molecular_name | C37C3.3 | |||||||||
Other_name | phi-63 | Person_evidence | WBPerson2582 | |||||||
CELE_C37C3.3 | Accession_evidence | NDB | BX284605 | |||||||
Public_name | vps-32.2 | |||||||||
DB_info | Database (5) | |||||||||
Species | Caenorhabditis elegans | |||||||||
History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
2 | 17 Mar 2005 13:54:35 | WBPerson2970 | Name_change | Other_name | phi-63 | |||||
3 | 04 Jun 2007 15:54:19 | WBPerson2970 | Name_change | CGC_name | vps-32.2 | |||||
4 | 21 Sep 2017 13:55:50 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
Status | Live | |||||||||
Gene_info | Biotype | SO:0000336 | ||||||||
Gene_class | vps | |||||||||
Allele (15) | ||||||||||
RNASeq_FPKM (74) | ||||||||||
Ortholog | WBGene00126899 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
WBGene00142327 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||||
WBGene00054117 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
WBGene00101448 | Pristionchus pacificus | From_analysis | Inparanoid_8 | |||||||
Paralog | WBGene00011976 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00016961 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||||
Panther | ||||||||||
WBGene00018290 | Caenorhabditis elegans | From_analysis | Panther | |||||||
WBGene00022027 | Caenorhabditis elegans | From_analysis | Panther | |||||||
WBGene00022017 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | |||||||
WBGene00020025 | Caenorhabditis elegans | From_analysis | TreeFam | |||||||
Panther | ||||||||||
Structured_description | Automated_description | Enriched in PLM; Y cell; intestine; and sensory neurons based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-12; and let-7 based on tiling array; proteomic; microarray; and RNA-seq studies. Is affected by multi-walled carbon nanotube; Rifampin; and allantoin based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | |||||||||
WBPerson37462 | ||||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
Molecular_info | Corresponding_CDS_history | C37C3.3:wp154 | ||||||||
C37C3.3:wp261 | ||||||||||
Corresponding_pseudogene | C37C3.3 | |||||||||
Other_sequence | FF680403.1 | |||||||||
SSC00343_1 | ||||||||||
FK800257.1 | ||||||||||
Associated_feature | WBsf1000532 | |||||||||
Experimental_info | Expr_pattern | Chronogram629 | ||||||||
Expr3595 | ||||||||||
Expr5457 | ||||||||||
Expr1011820 | ||||||||||
Expr1037074 | ||||||||||
Expr1146108 | ||||||||||
Expr2018022 | ||||||||||
Expr2036159 | ||||||||||
Drives_construct | WBCnstr00004061 | |||||||||
WBCnstr00028017 | ||||||||||
Construct_product (2) | ||||||||||
Microarray_results | SMD_C37C3.3 | |||||||||
SMD_C37C3.3:2 | ||||||||||
172257_x_at | ||||||||||
Aff_C37C3.3 | ||||||||||
GPL13394_WBGene00016497 | ||||||||||
GPL13914_C37C3.3 | ||||||||||
GPL14144_C37C3.3_368-427_0.945_2_A | ||||||||||
GPL8673_C37C3_3P00291 | ||||||||||
GPL8673_C37C3_3P00300 | ||||||||||
GPL8673_C37C3_3P00433 | ||||||||||
Expression_cluster (45) | ||||||||||
Interaction (42) | ||||||||||
Map_info | Map | V | Position | 0.917665 | Error | 0.000744 | ||||
Positive | Positive_clone | C37C3 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
Pseudo_map_position | ||||||||||
Reference | WBPaper00026641 | |||||||||
WBPaper00033139 | ||||||||||
WBPaper00038491 | ||||||||||
WBPaper00039823 | ||||||||||
WBPaper00040525 | ||||||||||
WBPaper00042550 | ||||||||||
WBPaper00055090 | ||||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |