WormBase Tree Display for Gene: WBGene00016495
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WBGene00016495 | SMap | S_parent | Sequence | C37C3 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Allele (36) | ||||||
RNASeq_FPKM (74) | ||||||
Contained_in_operon | CEOP5168 | |||||
Ortholog (27) | ||||||
Paralog | WBGene00007440 | Caenorhabditis elegans | From_analysis | TreeFam | ||
WormBase-Compara | ||||||
WBGene00020747 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WormBase-Compara | ||||||
WBGene00010436 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00012927 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00012968 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00015574 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00020052 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
Structured_description | Automated_description | Enriched in AFD; MSpaaaaa; body wall muscle cell; germ line; and nerve ring neurons based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including skn-1; dpy-10; and daf-12 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by nine chemicals including rotenone; manganese chloride; and D-glucose based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: NADAR domain; NADAR; and YbiA-like superfamily. | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info (4) | ||||||
Experimental_info | RNAi_result | WBRNAi00011712 | Inferred_automatically | RNAi_primary | ||
WBRNAi00029632 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00062153 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00042102 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr1025254 | |||||
Expr1037072 | ||||||
Expr1146102 | ||||||
Expr2001498 | ||||||
Expr2019719 | ||||||
Drives_construct | WBCnstr00028019 | |||||
Construct_product | WBCnstr00028019 | |||||
Microarray_results (18) | ||||||
Expression_cluster (93) | ||||||
SAGE_tag | SAGE:tgctctatag | Strand | Antisense | |||
SAGE:tgctctatagcagtgaa | Strand | Antisense | ||||
SAGE:gacttgatgt | Strand | Sense | ||||
Unambiguously_mapped | ||||||
SAGE:gacttgatgtacaaaga | Strand | Sense | ||||
Unambiguously_mapped | ||||||
Interaction (28) | ||||||
Map_info | Positive | Positive_clone | C37C3 | Inferred_automatically | From sequence, transcript, pseudogene data | |
Interpolated_map_position | V | 0.919474 | ||||
Method | Gene |