WormBase Tree Display for Gene: WBGene00015574
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WBGene00015574 | SMap | S_parent | Sequence | C07G3 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | irg-1 | Person_evidence | WBPerson3965 | |||
Sequence_name | C07G3.2 | ||||||
Molecular_name | C07G3.2 | ||||||
C07G3.2.1 | |||||||
CE07993 | |||||||
Other_name | CELE_C07G3.2 | Accession_evidence | NDB | BX284605 | |||
Public_name | irg-1 | ||||||
DB_info | Database | AceView | gene | 5D999 | |||
WormQTL | gene | WBGene00015574 | |||||
WormFlux | gene | WBGene00015574 | |||||
NDB | locus_tag | CELE_C07G3.2 | |||||
NCBI | gene | 182379 | |||||
RefSeq | protein | NM_071582.5 | |||||
TREEFAM | TREEFAM_ID | TF316991 | |||||
TrEMBL | UniProtAcc | O16327 | |||||
UniProt_GCRP | UniProtAcc | O16327 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | irg | ||||||
Allele (37) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00027834 | ||||||
00027835 | |||||||
00105960 | |||||||
00105967 | |||||||
00105968 | |||||||
Ortholog (32) | |||||||
Paralog | WBGene00007440 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||
WormBase-Compara | |||||||
WBGene00020747 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||
WormBase-Compara | |||||||
WBGene00010436 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00012927 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00012968 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00016495 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00020052 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | irg-1 encodes a protein containing a conserved DUF1768 domain, a domain of unknown function found as a stand-alone domain in bacterial and bacteriophage proteins as well as fused to proteins involved in riboflavin biosynthesis in bacteria and plants; irg-1 expression is induced in response to infection with pathogenic Pseudomonas aeruginosa, in a manner independent of the p38 MAPK pathway, but dependent upon the ZIP-2 bZIP transcription factor; irg-1 expression is also induced at a low level in response to cadmium exposure, in a manner that is dependent upon pmk-1. | Paper_evidence | WBPaper00028789 | |||
WBPaper00035891 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 08 Feb 2010 00:00:00 | ||||||
Automated_description | Involved in antibacterial innate immune response and defense response to Gram-negative bacterium. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C07G3.2 | |||||
Corresponding_transcript | C07G3.2.1 | ||||||
Other_sequence | CBC16326_1 | ||||||
Associated_feature | WBsf231582 | ||||||
Experimental_info | RNAi_result | WBRNAi00040026 | Inferred_automatically | RNAi_primary | |||
WBRNAi00010403 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr8898 | ||||||
Expr1028122 | |||||||
Expr1144099 | |||||||
Expr2012816 | |||||||
Expr2031055 | |||||||
Drives_construct | WBCnstr00005926 | ||||||
WBCnstr00013591 | |||||||
WBCnstr00028740 | |||||||
Construct_product | WBCnstr00020134 | ||||||
WBCnstr00028740 | |||||||
Microarray_results (19) | |||||||
Expression_cluster (303) | |||||||
Interaction (63) | |||||||
WBProcess | WBbiopr:00000008 | ||||||
WBbiopr:00000039 | |||||||
Map_info (3) | |||||||
Reference (17) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |