WormBase Tree Display for Gene: WBGene00007358
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WBGene00007358 | SMap | S_parent | Sequence | C06A12 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | lact-6 | Person_evidence | WBPerson168 | |||
Sequence_name | C06A12.5 | ||||||
Molecular_name | C06A12.5 | ||||||
C06A12.5.1 | |||||||
CE18489 | |||||||
Other_name | CELE_C06A12.5 | Accession_evidence | NDB | BX284604 | |||
Public_name | lact-6 | ||||||
DB_info | Database | AceView | gene | 4S374 | |||
WormQTL | gene | WBGene00007358 | |||||
WormFlux | gene | WBGene00007358 | |||||
NDB | locus_tag | CELE_C06A12.5 | |||||
Panther | gene | CAEEL|WormBase=WBGene00007358|UniProtKB=Q9XU43 | |||||
family | PTHR43319 | ||||||
NCBI | gene | 182288 | |||||
RefSeq | protein | NM_070708.6 | |||||
TREEFAM | TREEFAM_ID | TF315291 | |||||
TrEMBL | UniProtAcc | Q9XU43 | |||||
UniProt_GCRP | UniProtAcc | Q9XU43 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | lact | ||||||
Allele (38) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (29) | |||||||
Paralog | WBGene00018523 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00010877 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00010897 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00014164 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00016355 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00000767 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00008410 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00021315 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | lact-6 encodes a beta-lactamase domain-containing protein that contains a predicted signal sequence in its N terminus. | Curator_confirmed | WBPerson1843 | |||
Date_last_updated | 18 Dec 2007 00:00:00 | ||||||
Automated_description | Enriched in Y cell and intestine based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including let-60; daf-12; and eat-2 based on microarray and RNA-seq studies. Is affected by fourteen chemicals including methylmercury hydroxide; methylmercuric chloride; and multi-walled carbon nanotube based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Beta-lactamase-related; Beta-lactamase; and Beta-lactamase/transpeptidase-like. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C06A12.5 | |||||
Corresponding_transcript | C06A12.5.1 | ||||||
Other_sequence (24) | |||||||
Associated_feature | WBsf668589 | ||||||
Experimental_info | RNAi_result | WBRNAi00028530 | Inferred_automatically | RNAi_primary | |||
WBRNAi00039814 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00010261 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1010530 | ||||||
Expr1143895 | |||||||
Expr2012998 | |||||||
Expr2031230 | |||||||
Drives_construct | WBCnstr00033803 | ||||||
Construct_product | WBCnstr00033803 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (142) | |||||||
Interaction | WBInteraction000172291 | ||||||
WBInteraction000430691 | |||||||
WBInteraction000443677 | |||||||
WBInteraction000455357 | |||||||
WBInteraction000455358 | |||||||
WBInteraction000464144 | |||||||
WBInteraction000465205 | |||||||
WBInteraction000471213 | |||||||
Map_info | Map | IV | Position | 16.9289 | Error | 0.036594 | |
Positive | Positive_clone | C06A12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |