WormBase Tree Display for Gene: WBGene00004239
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| WBGene00004239 | SMap | S_parent | Sequence | Y45F10A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | puf-3 | Person_evidence | WBPerson320 | |||||
| Sequence_name | Y45F10A.2 | ||||||||
| Molecular_name | Y45F10A.2 | ||||||||
| Y45F10A.2.1 | |||||||||
| CE18393 | |||||||||
| Other_name | CELE_Y45F10A.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | puf-3 | ||||||||
| DB_info | Database | AceView | gene | 4O276 | |||||
| WormQTL | gene | WBGene00004239 | |||||||
| WormFlux | gene | WBGene00004239 | |||||||
| NDB | locus_tag | CELE_Y45F10A.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004239|UniProtKB=Q9U2G4 | |||||||
| family | PTHR12537 | ||||||||
| NCBI | gene | 178320 | |||||||
| RefSeq | protein | NM_070205.8 | |||||||
| TREEFAM | TREEFAM_ID | TF318622 | |||||||
| TrEMBL | UniProtAcc | Q9U2G4 | |||||||
| UniProt_GCRP | UniProtAcc | Q9U2G4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | puf | ||||||||
| Allele (26) | |||||||||
| Strain | WBStrain00047331 | ||||||||
| WBStrain00047327 | |||||||||
| WBStrain00050726 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00099227 | ||||||||
| 00099228 | |||||||||
| 00099229 | |||||||||
| 00099230 | |||||||||
| 00099231 | |||||||||
| 00099232 | |||||||||
| 00099233 | |||||||||
| 00099234 | |||||||||
| 00112531 | |||||||||
| Ortholog (45) | |||||||||
| Paralog | WBGene00001401 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001402 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004245 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004241 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00022257 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004243 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004242 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004240 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| WBGene00004244 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | The puf-3 gene encodes a predicted RNA binding protein that is a member of the conserved PUF (Pumilio and FBF) family of RNA binding proteins; PUF-3 is expressed in the ovary and is required for multiple aspects of early embryogenesis including proper cell cycle timing, spindle positioning, and formation of the polar bodies and pronuclei. | Paper_evidence | WBPaper00004540 | |||||
| WBPaper00006101 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables mRNA 3'-UTR binding activity. Predicted to be involved in post-transcriptional regulation of gene expression. Predicted to be located in cytoplasm and nucleus. Expressed in germ line. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y45F10A.2 | |||||||
| Corresponding_transcript | Y45F10A.2.1 | ||||||||
| Other_sequence | Dviv_isotig21463 | ||||||||
| CJC00524_1 | |||||||||
| CGC00728_1 | |||||||||
| Dviv_isotig21462 | |||||||||
| Associated_feature | WBsf977023 | ||||||||
| WBsf977024 | |||||||||
| WBsf977025 | |||||||||
| WBsf231136 | |||||||||
| WBsf231137 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00077432 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037081 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056566 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085611 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00086639 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116319 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056567 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037080 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116320 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007840 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4133 | ||||||||
| Expr1019978 | |||||||||
| Expr1032090 | |||||||||
| Expr1160037 | |||||||||
| Expr2015187 | |||||||||
| Expr2033421 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (197) | |||||||||
| Interaction (357) | |||||||||
| Map_info | Map | IV | Position | 9.43259 | Error | 0.016589 | |||
| Positive | Positive_clone | Y45F10A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (24) | |||||||||
| Remark | sequence connection from [Bernstein M, Wickens MP] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
