WormBase Tree Display for Gene: WBGene00004244
expand all nodes | collapse all nodes | view schema
| WBGene00004244 | SMap | S_parent | Sequence | C30G12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | puf-8 | Person_evidence | WBPerson320 | |||||
| Sequence_name | C30G12.7 | ||||||||
| Molecular_name | C30G12.7 | ||||||||
| C30G12.7.1 | |||||||||
| CE37486 | |||||||||
| Other_name | teg-2 | Person_evidence | WBPerson555 | ||||||
| CELE_C30G12.7 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | puf-8 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 14 Aug 2012 14:38:21 | WBPerson2970 | Event | Acquires_merge | WBGene00006564 | ||||
| Name_change | Other_name | teg-2 | |||||||
| Acquires_merge | WBGene00006564 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | puf | ||||||||
| Allele (42) | |||||||||
| Strain | WBStrain00022254 | ||||||||
| WBStrain00022619 | |||||||||
| WBStrain00022166 | |||||||||
| WBStrain00022639 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Contained_in_operon | CEOP2292 | ||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00001401 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00001402 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004239 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004241 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004242 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004243 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004245 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022257 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | puf-8 encodes a member of the PUF family of RNA binding proteins. | Paper_evidence | WBPaper00042132 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 01 Apr 2014 00:00:00 | ||||||||
| Automated_description | Enables mRNA 3'-UTR binding activity. Involved in male meiotic nuclear division; negative regulation of MAPK cascade; and spermatogenesis. Located in P granule and nuclear periphery. Expressed in several structures, including P3.p hermaphrodite; P4.p hermaphrodite; germ line; sperm; and vulva. Used to study obesity. Human ortholog(s) of this gene implicated in cerebellar ataxia type 47. Is an ortholog of human PUM1 (pumilio RNA binding family member 1) and PUM2 (pumilio RNA binding family member 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:9970 | Homo sapiens | Paper_evidence | WBPaper00061889 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 28 Jun 2022 00:00:00 | ||||||||
| Potential_model | DOID:0111743 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14957) | |||||
| Models_disease_in_annotation | WBDOannot00001263 | ||||||||
| Molecular_info | Corresponding_CDS | C30G12.7 | |||||||
| Corresponding_CDS_history | C30G12.7:wp130 | ||||||||
| Corresponding_transcript | C30G12.7.1 | ||||||||
| Other_sequence | CR01371 | ||||||||
| CRC02691_1 | |||||||||
| CJC01330_1 | |||||||||
| Associated_feature | WBsf019217 | ||||||||
| WBsf019218 | |||||||||
| WBsf223321 | |||||||||
| Gene_product_binds | WBsf899537 | ||||||||
| WBsf899538 | |||||||||
| WBsf899539 | |||||||||
| WBsf899540 | |||||||||
| Experimental_info | RNAi_result (24) | ||||||||
| Expr_pattern (11) | |||||||||
| Drives_construct (12) | |||||||||
| Construct_product | WBCnstr00005726 | ||||||||
| WBCnstr00005727 | |||||||||
| WBCnstr00017042 | |||||||||
| WBCnstr00017521 | |||||||||
| WBCnstr00017549 | |||||||||
| WBCnstr00017550 | |||||||||
| WBCnstr00017551 | |||||||||
| WBCnstr00017552 | |||||||||
| WBCnstr00035610 | |||||||||
| Regulate_expr_cluster | WBPaper00045618:puf-8_downregulated | ||||||||
| WBPaper00045618:puf-8_upregulated | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (127) | |||||||||
| Interaction (43) | |||||||||
| WBProcess | WBbiopr:00000069 | ||||||||
| Map_info | Map | II | Position | 0.500136 | Error | 0.000128 | |||
| Positive | Positive_clone | C30G12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4171 | |||||||
| 4615 | |||||||||
| 5564 | |||||||||
| 3796 | |||||||||
| 3826 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (78) | |||||||||
| Remark | sequence connection from [Bernstein M, Wickens MP] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
