WormBase Tree Display for Gene: WBGene00003878
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| WBGene00003878 | SMap | S_parent | Sequence | F56F4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pept-3 | Person_evidence | WBPerson2603 | |||||
| WBPerson861 | |||||||||
| Sequence_name | F56F4.5 | ||||||||
| Molecular_name | F56F4.5 | ||||||||
| F56F4.5.1 | |||||||||
| CE11268 | |||||||||
| Other_name | opt-3 | ||||||||
| CELE_F56F4.5 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | pept-3 | ||||||||
| DB_info | Database | AceView | gene | 1G713 | |||||
| WormQTL | gene | WBGene00003878 | |||||||
| WormFlux | gene | WBGene00003878 | |||||||
| NDB | locus_tag | CELE_F56F4.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003878|UniProtKB=O01840 | |||||||
| family | PTHR11654 | ||||||||
| NCBI | gene | 172298 | |||||||
| RefSeq | protein | NM_059366.8 | |||||||
| SwissProt | UniProtAcc | O01840 | |||||||
| UniProt_GCRP | UniProtAcc | O01840 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 29 Apr 2009 13:55:04 | WBPerson9133 | Name_change | CGC_name | pept-3 | ||||
| Other_name | opt-3 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pept | ||||||||
| Allele (49) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (43) | |||||||||
| Paralog | WBGene00003876 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003877 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | pept-3 encodes a H+-coupled oligopeptide transporter; when expressed in Xenopus oocytes and mammalian cells, PEPT-3 can function in H+-coupled dipeptide transport, but in Xenopus oocytes, PEPT-3 appears to function predominantly as a H+ channel; a pept-3::gfp promoter fusion is reportedly expressed in neurons and in the pharynx. | Paper_evidence | WBPaper00003971 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 29 Apr 2009 00:00:00 | ||||||||
| Automated_description | Enables dipeptide transmembrane transporter activity and proton channel activity. Involved in dipeptide transport and proton transmembrane transport. Predicted to be located in membrane. Expressed in AVAL; AVAR; pharynx; and touch receptor neurons. Is an ortholog of human SLC15A1 (solute carrier family 15 member 1) and SLC15A2 (solute carrier family 15 member 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F56F4.5 | |||||||
| Corresponding_transcript | F56F4.5.1 | ||||||||
| Other_sequence (30) | |||||||||
| Associated_feature | WBsf643331 | ||||||||
| WBsf983842 | |||||||||
| WBsf983843 | |||||||||
| WBsf1009905 | |||||||||
| WBsf1009906 | |||||||||
| WBsf217754 | |||||||||
| WBsf217755 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00094488 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00003815 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094198 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094388 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094372 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003814 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032979 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048757 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1089 | ||||||||
| Expr1011949 | |||||||||
| Expr1152503 | |||||||||
| Expr2014825 | |||||||||
| Expr2033059 | |||||||||
| Drives_construct | WBCnstr00006360 | ||||||||
| WBCnstr00007188 | |||||||||
| WBCnstr00007653 | |||||||||
| WBCnstr00010074 | |||||||||
| WBCnstr00013754 | |||||||||
| WBCnstr00037948 | |||||||||
| Construct_product | WBCnstr00037948 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (159) | |||||||||
| Interaction (29) | |||||||||
| Map_info | Map | I | Position | 0.791898 | Error | 0.003627 | |||
| Positive | Positive_clone | F56F4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003971 | ||||||||
| WBPaper00006104 | |||||||||
| WBPaper00006186 | |||||||||
| WBPaper00010797 | |||||||||
| WBPaper00017652 | |||||||||
| WBPaper00026828 | |||||||||
| WBPaper00035598 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062128 | |||||||||
| Remark | Sequence connection from [Fei YJ, Leibach FH], [020814 krb] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
