WormBase Tree Display for Gene: WBGene00003876
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| WBGene00003876 | SMap | S_parent | Sequence | C06G8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pept-2 | Person_evidence | WBPerson2603 | |||||
| WBPerson861 | |||||||||
| Sequence_name | C06G8.2 | ||||||||
| Molecular_name | C06G8.2 | ||||||||
| C06G8.2.1 | |||||||||
| CE28887 | |||||||||
| Other_name | pep-1 | ||||||||
| CPTA | Accession_evidence | EMBL | AF000417 | ||||||
| opt-1 | |||||||||
| CELE_C06G8.2 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | pept-2 | ||||||||
| DB_info | Database | AceView | gene | 4L557 | |||||
| WormQTL | gene | WBGene00003876 | |||||||
| WormFlux | gene | WBGene00003876 | |||||||
| NDB | locus_tag | CELE_C06G8.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003876|UniProtKB=Q17758 | |||||||
| family | PTHR11654 | ||||||||
| NCBI | gene | 177973 | |||||||
| RefSeq | protein | NM_069601.5 | |||||||
| SwissProt | UniProtAcc | Q17758 | |||||||
| UniProt_GCRP | UniProtAcc | Q17758 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 29 Apr 2009 13:55:04 | WBPerson9133 | Name_change | CGC_name | pept-2 | ||||
| Other_name | opt-1 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pept | ||||||||
| Allele (42) | |||||||||
| Strain | WBStrain00031859 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00003877 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00003878 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | pept-2 encodes a high-affinity, proton-coupled oligopeptide transporter; when expressed in Xenopus ooctyes, PEPT-2 exhibits proton-coupled transport activity for a broad spectrum of peptide substrates; pept-2 mRNA is detected at all stages of development, but is expressed at highest levels in late larval and adult stages; additionally, a pept-2::GFP reporter exhibits expression primarily in vulval, pharyngeal, and anal muscles. | Paper_evidence | WBPaper00003116 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00006186 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 14 Dec 2009 00:00:00 | ||||||||
| Automated_description | Predicted to enable dipeptide transmembrane transporter activity. Involved in IRE1-mediated unfolded protein response. Predicted to be located in membrane. Expressed in anal depressor muscle; anal sphincter muscle; pharyngeal muscle cell; and vulval muscle. Is an ortholog of human SLC15A1 (solute carrier family 15 member 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C06G8.2 | |||||||
| Corresponding_CDS_history | C06G8.2:wp61 | ||||||||
| Corresponding_transcript | C06G8.2.1 | ||||||||
| Other_sequence | AF000417 | ||||||||
| Hbac_isotig02011 | |||||||||
| JI166324.1 | |||||||||
| CRC06628_1 | |||||||||
| BUC00638_1 | |||||||||
| JI180326.1 | |||||||||
| Acan_isotig15070 | |||||||||
| Associated_feature | WBsf646332 | ||||||||
| WBsf997699 | |||||||||
| WBsf1018139 | |||||||||
| WBsf229043 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00039948 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00027802 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010347 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1420 | ||||||||
| Expr8047 | |||||||||
| Expr1010296 | |||||||||
| Expr1031824 | |||||||||
| Expr1144022 | |||||||||
| Expr2014824 | |||||||||
| Expr2033058 | |||||||||
| Drives_construct | WBCnstr00009191 | ||||||||
| WBCnstr00013076 | |||||||||
| WBCnstr00037950 | |||||||||
| Construct_product | WBCnstr00007869 | ||||||||
| WBCnstr00037950 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (148) | |||||||||
| Interaction (17) | |||||||||
| Map_info | Map | IV | Position | 4.70116 | Error | 0.002106 | |||
| Positive | Positive_clone | C06G8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4245 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003116 | ||||||||
| WBPaper00003734 | |||||||||
| WBPaper00003971 | |||||||||
| WBPaper00006186 | |||||||||
| WBPaper00011545 | |||||||||
| WBPaper00023015 | |||||||||
| WBPaper00031849 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00053532 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
