WormBase Tree Display for Gene: WBGene00002987
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WBGene00002987 | SMap | S_parent | Sequence | ZC64 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | lim-4 | Person_evidence | WBPerson545 | |||||
Sequence_name | ZC64.4 | ||||||||
Molecular_name | ZC64.4a | ||||||||
ZC64.4a.1 | |||||||||
CE25675 | |||||||||
ZC64.4b | |||||||||
CE51976 | |||||||||
ZC64.4c | |||||||||
CE52031 | |||||||||
ZC64.4b.1 | |||||||||
ZC64.4c.1 | |||||||||
Other_name | nss-1 | Paper_evidence | WBPaper00026818 | ||||||
CELE_ZC64.4 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | lim-4 | ||||||||
DB_info | Database | AceView | gene | XE490 | |||||
WormQTL | gene | WBGene00002987 | |||||||
WormFlux | gene | WBGene00002987 | |||||||
NDB | locus_tag | CELE_ZC64.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00002987|UniProtKB=G5EEA1 | |||||||
family | PTHR24208 | ||||||||
NCBI | gene | 180672 | |||||||
RefSeq | protein | NM_076268.2 | |||||||
NM_001351878.2 | |||||||||
NM_001351879.2 | |||||||||
SwissProt | UniProtAcc | G5EEA1 | |||||||
UniProt_GCRP | UniProtAcc | G5EEA1 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 19 Dec 2005 14:58:13 | WBPerson2970 | Event | Acquires_merge | WBGene00003820 | ||||
Name_change | Other_name | nss-1 | |||||||
Acquires_merge | WBGene00003820 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | lim | ||||||||
Allele (81) | |||||||||
Strain | WBStrain00001913 | ||||||||
WBStrain00023455 | |||||||||
WBStrain00029156 | |||||||||
WBStrain00005258 | |||||||||
WBStrain00049271 | |||||||||
In_cluster | conserved_RDE-1_cluster | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (24) | |||||||||
Ortholog (38) | |||||||||
Paralog | WBGene00000438 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003167 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003000 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00006654 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00002989 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WBGene00002988 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00006824 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00015216 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00017644 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00022518 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | lim-4 encodes a LIM homeodomain protein homologous to murine Lhx6 and L3/Lhx7, and to Drosophila ARROWHEAD; LIM-4 is required for differentiation of AWB chemosensory neurons, for several but not all aspects of RID motor neuron differentiation, expression of ser-2, repulsion from chemosensory repellants, SAA neurite outgrowth, and normal locomotion and head foraging; lim-4 is expressed in AWB, RID, RIV, RMDL, RMDR, RMEV, four SAA neurons, and four SIA neurons. | Paper_evidence | WBPaper00003593 | |||||
WBPaper00006180 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enables DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in several processes, including cell differentiation; positive regulation of transcription by RNA polymerase II; and serotonin biosynthetic process. Located in nucleus. Expressed in several structures, including ABalpppppa; head muscle; head neurons; lumbar neurons; and somatic nervous system. Is an ortholog of human LHX6 (LIM homeobox 6) and LHX8 (LIM homeobox 8). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | ZC64.4a | |||||||
ZC64.4b | |||||||||
ZC64.4c | |||||||||
Corresponding_transcript | ZC64.4a.1 | ||||||||
ZC64.4b.1 | |||||||||
ZC64.4c.1 | |||||||||
Other_sequence (14) | |||||||||
Associated_feature | WBsf653872 | ||||||||
WBsf670378 | |||||||||
WBsf670379 | |||||||||
WBsf978715 | |||||||||
WBsf1004755 | |||||||||
WBsf237227 | |||||||||
WBsf237228 | |||||||||
Gene_product_binds | WBsf979152 | ||||||||
WBsf979153 | |||||||||
WBsf979156 | |||||||||
Transcription_factor | WBTranscriptionFactor000525 | ||||||||
Experimental_info | RNAi_result | WBRNAi00093991 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00021755 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00059017 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (16) | |||||||||
Drives_construct | WBCnstr00000961 | ||||||||
WBCnstr00001663 | |||||||||
WBCnstr00002702 | |||||||||
WBCnstr00005147 | |||||||||
WBCnstr00006276 | |||||||||
WBCnstr00006356 | |||||||||
WBCnstr00012900 | |||||||||
WBCnstr00036303 | |||||||||
Construct_product | WBCnstr00000961 | ||||||||
WBCnstr00005147 | |||||||||
WBCnstr00036303 | |||||||||
WBCnstr00038818 | |||||||||
Microarray_results (18) | |||||||||
Expression_cluster (135) | |||||||||
Interaction (81) | |||||||||
Map_info | Map | X | Position | -9.21387 | Error | 0.024615 | |||
Positive | Positive_clone | ZC64 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4205 | |||||||
4476 | |||||||||
Pseudo_map_position | |||||||||
Reference (64) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |