WormBase Tree Display for Gene: WBGene00001987
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WBGene00001987 | SMap | S_parent | Sequence | Y39B6A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | hot-2 | Person_evidence | WBPerson42 | |||||
Sequence_name | Y39B6A.48 | ||||||||
Molecular_name | Y39B6A.48a | ||||||||
Y39B6A.48a.1 | |||||||||
CE44849 | |||||||||
Y39B6A.48b | |||||||||
CE45024 | |||||||||
Y39B6A.48b.1 | |||||||||
Other_name | CELE_Y39B6A.48 | Accession_evidence | NDB | BX284605 | |||||
Public_name | hot-2 | ||||||||
DB_info | Database | AceView | gene | 5T661 | |||||
WormQTL | gene | WBGene00001987 | |||||||
WormFlux | gene | WBGene00001987 | |||||||
NDB | locus_tag | CELE_Y39B6A.48 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001987|UniProtKB=D5SH00 | |||||||
family | PTHR34722 | ||||||||
NCBI | gene | 180261 | |||||||
RefSeq | protein | NM_001269919.3 | |||||||
NM_001269917.3 | |||||||||
TREEFAM | TREEFAM_ID | TF315944 | |||||||
TrEMBL | UniProtAcc | D5SH00 | |||||||
D5SH01 | |||||||||
UniProt_GCRP | UniProtAcc | D5SH00 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 28 Apr 2010 10:02:54 | WBPerson4025 | Event | Acquires_merge | WBGene00012667 | ||||
Acquires_merge | WBGene00012667 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | hot | ||||||||
Allele (521) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00007689 | ||||||||
00007690 | |||||||||
00007691 | |||||||||
00007692 | |||||||||
Ortholog (27) | |||||||||
Paralog | WBGene00001986 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003849 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WBGene00001990 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WBGene00001989 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WBGene00020489 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WBGene00001988 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WBGene00044484 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | hot-2 encodes a predicted paralog of ODR-2 and contains a Ly-6 domain. | Paper_evidence | WBPaper00004498 | |||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to be involved in olfactory behavior and response to odorant. Predicted to be located in axon and neuronal cell body. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y39B6A.48a | |||||||
Y39B6A.48b | |||||||||
Corresponding_CDS_history | Y39B6A.48:wp127 | ||||||||
Y39B6A.48:wp214 | |||||||||
Y39B6A.48c:wp262 | |||||||||
Corresponding_transcript | Y39B6A.48a.1 | ||||||||
Y39B6A.48b.1 | |||||||||
Other_sequence (26) | |||||||||
Associated_feature (15) | |||||||||
Experimental_info | RNAi_result | WBRNAi00056209 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00020375 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00020377 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00056198 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00056199 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1029111 | ||||||||
Expr1031156 | |||||||||
Expr1159702 | |||||||||
Expr2012540 | |||||||||
Expr2030779 | |||||||||
Microarray_results (30) | |||||||||
Expression_cluster (145) | |||||||||
Map_info | Map | V | Position | 20.2116 | Error | 0.0015 | |||
Positive | Positive_clone | Y39B6A | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00004498 | ||||||||
Remark | Sequence connection from [Chou JH, Bargmann CI, Sengupta P] | ||||||||
Sequence connection updated from Y39B6B.dd. [020620 krb] | |||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |