WormBase Tree Display for Gene: WBGene00000434
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| WBGene00000434 | SMap | S_parent | Sequence | Y65B4BR | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ceh-9 | Person_evidence | WBPerson83 | |||||
| Sequence_name | Y65B4BR.9 | ||||||||
| Molecular_name | Y65B4BR.9 | ||||||||
| Y65B4BR.9.1 | |||||||||
| CE36343 | |||||||||
| Other_name | CELE_Y65B4BR.9 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | ceh-9 | ||||||||
| DB_info | Database | AceView | gene | 1B36 | |||||
| WormFlux | gene | WBGene00000434 | |||||||
| NDB | locus_tag | CELE_Y65B4BR.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000434|UniProtKB=P56407 | |||||||
| family | PTHR24340 | ||||||||
| NCBI | gene | 267057 | |||||||
| RefSeq | protein | NM_001026626.3 | |||||||
| SwissProt | UniProtAcc | P56407 | |||||||
| TREEFAM | TREEFAM_ID | TF315720 | |||||||
| UniProt_GCRP | UniProtAcc | P56407 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ceh | ||||||||
| Allele (30) | |||||||||
| Legacy_information | [C.elegansII] NMK. Similar to sea urchin gene TgHbox5. [Hawkins and McGhee 1990] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00048684 | ||||||||
| 00048685 | |||||||||
| 00048686 | |||||||||
| 00048687 | |||||||||
| 00048688 | |||||||||
| 00048689 | |||||||||
| 00048690 | |||||||||
| 00048691 | |||||||||
| 00048692 | |||||||||
| 00107394 | |||||||||
| Ortholog (43) | |||||||||
| Paralog | WBGene00000428 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000430 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00000445 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000450 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000449 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000463 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00004011 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00000584 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000447 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ceh-9 encodes a homeodomain-containing protein that is related to members of the NK family of homeodomain transcription factors; as a mutation in ceh-9 results in no obvious defects, the precise role of ceh-9 in C. elegans development and/or behavior is not yet known. | Paper_evidence | WBPaper00001346 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 16 Feb 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in head muscle; head neurons; intestine; lumbar neurons; and somatic nervous system. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y65B4BR.9 | |||||||
| Corresponding_transcript | Y65B4BR.9.1 | ||||||||
| Other_sequence | TSC05022_1 | ||||||||
| Acan_isotig21916 | |||||||||
| Dviv_isotig20004 | |||||||||
| TS05973 | |||||||||
| Associated_feature | WBsf648910 | ||||||||
| WBsf978272 | |||||||||
| WBsf982537 | |||||||||
| WBsf1009098 | |||||||||
| WBsf218919 | |||||||||
| Gene_product_binds (68) | |||||||||
| Transcription_factor | WBTranscriptionFactor000154 | ||||||||
| Experimental_info | Expr_pattern | Expr7735 | |||||||
| Expr15326 | |||||||||
| Expr15612 | |||||||||
| Expr1012094 | |||||||||
| Expr1161352 | |||||||||
| Expr1200055 | |||||||||
| Expr2009920 | |||||||||
| Expr2028160 | |||||||||
| Drives_construct | WBCnstr00012880 | ||||||||
| WBCnstr00037542 | |||||||||
| Construct_product | WBCnstr00016706 | ||||||||
| WBCnstr00037542 | |||||||||
| WBCnstr00038827 | |||||||||
| Microarray_results (13) | |||||||||
| Expression_cluster (65) | |||||||||
| Interaction (52) | |||||||||
| Map_info | Map | I | Position | -18.9396 | Error | 0.005384 | |||
| Positive | Positive_clone | JM#L1002 | |||||||
| Y65B4BR | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001346 | ||||||||
| WBPaper00014348 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00060123 | |||||||||
| WBPaper00061738 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
