WormBase Tree Display for Gene: WBGene00028969

WBGene00028969 SMap: S_parent: Sequence: cb25.fpc0156
  Identity: Version: 2
    Name: CGC_name: Cbr-lgc-48 From_analysis: Inferred_from_orthology
      Sequence_name: CBG06736
      Molecular_name: CBG06736
        CBG06736.1
        CBP47148
      Other_name: CBG_06736 Accession_evidence: NDB HE601320
      Public_name: Cbr-lgc-48
    DB_info: Database: NDB locus_tag CBG_06736
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:58 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 21 Apr 2008 17:10:50 WBPerson2970 Name_change: CGC_name: Cbr-lgc-48
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lgc
    RNASeq_FPKM: WBls:0000002 0.140083 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.185598 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        0.234652 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        0.035906 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        0.110752 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        0.114039 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 0.06778 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        0.13556 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBls:0000004.control_median
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        0.132016 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.211381 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        0.313139 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 0.018559 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        0.037117 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        0.074607 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        0.261311 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
        0.261521 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
        0.28946 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
      WBls:0000027 0.101112 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        0.303336 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        0 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.096552 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        0.12411 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        0.193104 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 0.161744 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.700364 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        0.903817 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        0.929356 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        1.10727 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        1.90979 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 0.022666 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0.040698 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        0.063719 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.086741 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        0.206566 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.676159 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        0.254368 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.282894 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.421994 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        0.449108 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
            RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.018183 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.109101 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 0.202173 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        0 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.036511 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.199914 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00132427
      00132428
      00132429
      00132430
      00132431
      00132432
    Contained_in_operon: CBOPA0773
    Ortholog (27)
    Paralog: WBGene00023750 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00024072 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00024359 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00024485 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00024487 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00024689 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00024720 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00024721 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00024816 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00024845 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00025000 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00025067 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00025242 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00025402 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00025608 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00025711 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00025881 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00025975 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00026192 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00026681 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027089 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027889 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027890 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027976 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00028865 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00028900 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00028929 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029209 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029397 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029459 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029484 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029988 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00030791 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00030804 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00030982 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00031802 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00031803 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032130 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032131 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032274 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032807 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032847 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033111 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033246 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033345 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033378 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033600 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033800 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033914 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034198 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034435 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034444 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034644 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034869 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034995 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035214 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035453 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035531 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035620 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035884 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035885 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036032 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036209 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036229 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036241 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036242 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036300 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036418 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036579 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036931 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036943 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036969 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037805 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037846 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037974 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037983 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00038316 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00038367 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00038401 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00039464 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00039476 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00039891 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00039930 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00040158 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00040276 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00040442 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041064 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041542 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041559 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041596 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041597 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041671 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041942 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042017 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042167 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042282 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042775 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042899 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00088409 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00270414 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00271497 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00271498 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00303210 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00303211 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans lgc-48. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG06736
    Corresponding_CDS_history: CBG06736:bp194
      CBG06736:bp255
    Corresponding_transcript: CBG06736.1
  Experimental_info: Expr_pattern: Expr1064917
    Microarray_results: GPL8303_CB6_WBGene00028969_A
      GPL8303_CB6_WBGene00028969_B
      GPL14143_CBG06736_930-989_0.939_2_A
  Method: Gene