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WormBase Tree Display for Gene: WBGene00000437

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Name Class

WBGene00000437SMapS_parentSequenceR13A5
IdentityVersion1
NameCGC_nameceh-13Person_evidenceWBPerson83
Sequence_nameR13A5.5
Molecular_nameR13A5.5
R13A5.5.1
CE28767
Other_nameCELE_R13A5.5Accession_evidenceNDBBX284603
Public_nameceh-13
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:20WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classceh
Allele (31)
Legacy_information[C.elegansII] pk20, pk36 : Tc1 insertions, no known phenotype. Encodes labial-like homeoprotein (68% identity in homeodomain). [Schaller et al. 1990]
StrainWBStrain00007522
WBStrain00035370
WBStrain00035371
WBStrain00035372
WBStrain00035830
WBStrain00007523
WBStrain00055067
RNASeq_FPKM (74)
GO_annotation (15)
Ortholog (41)
ParalogWBGene00001174Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00003024Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00003102Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00004024Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00011069Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015056Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015681Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015682Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00019646Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00019647Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00019650Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00021731Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00044535Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00045215Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptiona homolog of Hox genes of labial/Hox1 type; affects viability, body shape and anterior patterning during embryogenesis, interacts genetically with hox genes; and is expressed in A, D, E and MS lineages in the early embryo, and in the anterior dorsal hypodermal cells, anterior body wall muscle cells, and in the cells of the prospective ventral nerve cord at the comma stage; and in the ventral nerve cord and and ventral and dorsal hypodermal cells in L1 larvae.Paper_evidenceWBPaper00002941
WBPaper00003508
WBPaper00017634
Curator_confirmedWBPerson480
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable DNA-binding transcription factor activity. Involved in cell-cell adhesion and embryo development. Located in cytoplasm and nucleus. Expressed in several structures, including embryonic cell; hypodermis; neurons; non-striated muscle; and somatic nervous system. Human ortholog(s) of this gene implicated in Athabaskan brainstem dysgenesis syndrome and autistic disorder. Is an ortholog of human HOXB1 (homeobox B1) and HOXD1 (homeobox D1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelEFO:MONDO:0011090Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5111)
DOID:0050682Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5099)
DOID:12849Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5099)
DOID:0060041Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5099)
Molecular_infoCorresponding_CDSR13A5.5
Corresponding_transcriptR13A5.5.1
Other_sequence (19)
Associated_feature (36)
Gene_product_bindsWBsf919530
Transcription_factorWBTranscriptionFactor000611
Experimental_infoRNAi_result (41)
Expr_pattern (38)
Drives_construct (13)
Construct_product (23)
AntibodyWBAntibody00000220
WBAntibody00000625
Microarray_results (20)
Expression_cluster (134)
Interaction (126)
WBProcessWBbiopr:00000025
Map_infoMapIIIPosition-0.669233Error0.000684
PositivePositive_cloneDS#CH134
R13A5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4202
Pseudo_map_position
ReferenceWBPaper00001295
WBPaper00001434
WBPaper00001568
WBPaper00001767
WBPaper00001784
WBPaper00001815
WBPaper00001901
WBPaper00001902
WBPaper00002138
WBPaper00002941
WBPaper00003071
WBPaper00003170
WBPaper00003301
WBPaper00003331
WBPaper00003508
WBPaper00003858
WBPaper00003991
WBPaper00004109
WBPaper00004116
WBPaper00004315
WBPaper00004482
WBPaper00005094
WBPaper00005711
WBPaper00005911
WBPaper00005924
WBPaper00006081
WBPaper00006271
WBPaper00006399
WBPaper00010315
WBPaper00011150
WBPaper00011305
WBPaper00011473
WBPaper00011579
WBPaper00011598
WBPaper00011696
WBPaper00011728
WBPaper00011754
WBPaper00011798
WBPaper00012100
WBPaper00012333
WBPaper00014036
WBPaper00014386
WBPaper00014486
WBPaper00014597
WBPaper00014676
WBPaper00014695
WBPaper00014754
WBPaper00014780
WBPaper00015440
WBPaper00015461
WBPaper00015506
WBPaper00015737
WBPaper00015783
WBPaper00016856
WBPaper00016896
WBPaper00017540
WBPaper00017547
WBPaper00017592
WBPaper00017634
WBPaper00017795
WBPaper00018188
WBPaper00018800
WBPaper00019437
WBPaper00021017
WBPaper00021027
WBPaper00021676
WBPaper00021762
WBPaper00022279
WBPaper00022455
WBPaper00022771
WBPaper00022861
WBPaper00023017
WBPaper00023137
WBPaper00023348
WBPaper00024263
WBPaper00024768
WBPaper00025443
WBPaper00025639
WBPaper00025707
WBPaper00025880
WBPaper00027236
WBPaper00027262
WBPaper00027307
WBPaper00027309
WBPaper00027683
WBPaper00028435
WBPaper00028911
WBPaper00028984
WBPaper00030501
WBPaper00031565
WBPaper00032330
WBPaper00035553
WBPaper00036333
WBPaper00036725
WBPaper00038332
WBPaper00038491
WBPaper00043342
WBPaper00043814
WBPaper00047964
WBPaper00048760
WBPaper00048777
WBPaper00052393
WBPaper00053259
WBPaper00055090
WBPaper00059932
WBPaper00060123
WBPaper00061738
WBPaper00063709
WBPaper00064000
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene