WormBase Tree Display for Gene: WBGene00011069
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| WBGene00011069 | SMap | S_parent | Sequence | R06F6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | ceh-62 | Person_evidence | WBPerson83 | |||||
| Sequence_name | R06F6.6 | ||||||||
| Molecular_name | R06F6.6 | ||||||||
| R06F6.6.1 | |||||||||
| CE51240 | |||||||||
| Other_name | CELE_R06F6.6 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ceh-62 | ||||||||
| DB_info | Database | AceView | gene | 2L101 | |||||
| WormQTL | gene | WBGene00011069 | |||||||
| WormFlux | gene | WBGene00011069 | |||||||
| NDB | locus_tag | CELE_R06F6.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011069|UniProtKB=Q09602 | |||||||
| family | PTHR24333 | ||||||||
| NCBI | gene | 187642 | |||||||
| RefSeq | protein | NM_063925.6 | |||||||
| SwissProt | UniProtAcc | Q09602 | |||||||
| TREEFAM | TREEFAM_ID | TF351530 | |||||||
| UniProt_GCRP | UniProtAcc | Q09602 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 30 Sep 2011 16:40:16 | WBPerson2970 | Name_change | CGC_name | ceh-62 | ||||
| 3 | 18 Feb 2016 15:17:18 | WBPerson1983 | Event | Split_into | WBGene00269421 | ||||
| Split_into | WBGene00269421 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ceh | ||||||||
| Allele (43) | |||||||||
| Strain | WBStrain00003388 | ||||||||
| WBStrain00037742 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00055042 | ||||||||
| 00055043 | |||||||||
| 00055044 | |||||||||
| 00055045 | |||||||||
| 00055046 | |||||||||
| 00118363 | |||||||||
| Ortholog (31) | |||||||||
| Paralog (15) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in dorsal nerve cord; neurons; tail neurons; and ventral nerve cord. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R06F6.6 | |||||||
| Corresponding_CDS_history | R06F6.6:wp252 | ||||||||
| Corresponding_transcript | R06F6.6.1 | ||||||||
| Other_sequence | Oden_isotig20727 | ||||||||
| Dviv_isotig30065 | |||||||||
| ACC18728_1 | |||||||||
| Acan_isotig11853 | |||||||||
| FG353713.1 | |||||||||
| EX537241.1 | |||||||||
| Associated_feature | WBsf978294 | ||||||||
| WBsf989489 | |||||||||
| WBsf989490 | |||||||||
| WBsf989491 | |||||||||
| WBsf989492 | |||||||||
| WBsf1013098 | |||||||||
| WBsf1013099 | |||||||||
| WBsf1013100 | |||||||||
| WBsf222063 | |||||||||
| Gene_product_binds (35) | |||||||||
| Transcription_factor | WBTranscriptionFactor000456 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00051398 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00017493 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2092 | ||||||||
| Expr6471 | |||||||||
| Expr7631 | |||||||||
| Expr15601 | |||||||||
| Expr1015092 | |||||||||
| Expr1034863 | |||||||||
| Expr1155088 | |||||||||
| Expr2009898 | |||||||||
| Expr2028138 | |||||||||
| Drives_construct | WBCnstr00003857 | ||||||||
| WBCnstr00012776 | |||||||||
| WBCnstr00030956 | |||||||||
| Construct_product | WBCnstr00016806 | ||||||||
| WBCnstr00030956 | |||||||||
| Microarray_results | SMD_R06F6.6 | ||||||||
| 189665_at | |||||||||
| Aff_R06F6.6 | |||||||||
| GPL14144_R06F6.6_341-400_0.859_42_B | |||||||||
| GPL14144_R06F6.6_464-523_0.907_12_A | |||||||||
| GPL14144_R06F6.6_809-868_0.926_3_C | |||||||||
| GPL8673_R06F6_6P00177 | |||||||||
| GPL8673_R06F6_6P00571 | |||||||||
| Expression_cluster (150) | |||||||||
| Interaction (65) | |||||||||
| Map_info | Map | II | Position | 3.12748 | Error | 7.7e-05 | |||
| Positive | Positive_clone | R06F6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060123 | |||||||||
| WBPaper00064212 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
