WormBase Tree Display for Gene: WBGene00006520
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WBGene00006520 | SMap | S_parent | Sequence | D2013 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||
Name | CGC_name | egli-1 | Paper_evidence | WBPaper00058949 | |||
Sequence_name | D2013.10 | ||||||
Molecular_name | D2013.10 | ||||||
D2013.10.1 | |||||||
CE17622 | |||||||
Other_name | tag-175 | ||||||
CELE_D2013.10 | Accession_evidence | NDB | BX284602 | ||||
Public_name | egli-1 | ||||||
DB_info | Database | AceView | gene | 2J613 | |||
WormQTL | gene | WBGene00006520 | |||||
WormFlux | gene | WBGene00006520 | |||||
NDB | locus_tag | CELE_D2013.10 | |||||
Panther | gene | CAEEL|WormBase=WBGene00006520|UniProtKB=O62126 | |||||
family | PTHR43220 | ||||||
NCBI | gene | 183942 | |||||
RefSeq | protein | NM_063584.3 | |||||
SwissProt | UniProtAcc | O62126 | |||||
TREEFAM | TREEFAM_ID | TF314301 | |||||
UniProt_GCRP | UniProtAcc | O62126 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (3) | ||||||
Acquires_merge | WBGene00008406 | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | egli | ||||||
Allele (17) | |||||||
Strain | WBStrain00001380 | ||||||
WBStrain00002447 | |||||||
WBStrain00035887 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00037044 | ||||||
00037045 | |||||||
00037046 | |||||||
Ortholog (28) | |||||||
Paralog | WBGene00013513 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00011590 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
Structured_description | Concise_description | tag-175 encodes an ortholog of human TMEM41B, whose protein family is ancient (conserved in both animals and plants) but functionally uncharacterized; TAG-175 is broadly expressed (in hypodermis, muscle, neurons, intestine, spermetheca, and vulva); TAG-175 has no known function in vivo, since neither tag-175(RNAi) nor tag-175(gk278) has obvious phenotypes. | Paper_evidence | WBPaper00006525 | |||
WBPaper00025129 | |||||||
WBPaper00028877 | |||||||
WBPaper00031006 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 10 Dec 2007 00:00:00 | ||||||
Automated_description | Predicted to be located in endoplasmic reticulum membrane. Expressed in head; neurons; spermatheca; and vulva. Is an ortholog of human TMEM41B (transmembrane protein 41B). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | D2013.10 | |||||
Corresponding_transcript | D2013.10.1 | ||||||
Other_sequence | JI474104.1 | ||||||
JI167104.1 | |||||||
Oden_isotig17507 | |||||||
EX563170.1 | |||||||
MAC00829_1 | |||||||
Tcol_isotig07316 | |||||||
Acan_isotig11356 | |||||||
HGC03258_1 | |||||||
HG00346 | |||||||
HBC03875_1 | |||||||
Oden_isotig17508 | |||||||
TS00667 | |||||||
MJC02687_1 | |||||||
MA01518 | |||||||
TSC00542_1 | |||||||
BMC03118_1 | |||||||
EW741640.1 | |||||||
Tcol_isotig07317 | |||||||
MCC04104_1 | |||||||
Dviv_isotig25884 | |||||||
CJC12825_1 | |||||||
ES562742.1 | |||||||
Hbac_isotig04487 | |||||||
Name_isotig07959 | |||||||
EX013132.1 | |||||||
MC03457 | |||||||
ES562592.1 | |||||||
GP00788 | |||||||
EX013178.1 | |||||||
TDC01242_1 | |||||||
ACC11844_1 | |||||||
EX566276.1 | |||||||
EW742810.1 | |||||||
EX557784.1 | |||||||
Name_isotig05361 | |||||||
GPC00342_1 | |||||||
EY467924.1 | |||||||
CB037807.1 | |||||||
Tcir_isotig06657 | |||||||
MJ03574 | |||||||
Associated_feature | WBsf221869 | ||||||
WBsf221870 | |||||||
Experimental_info | RNAi_result | WBRNAi00062751 | Inferred_automatically | RNAi_primary | |||
WBRNAi00090586 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00114784 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00012561 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00114783 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00030378 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00114782 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00092950 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00062752 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00043438 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Chronogram1461 | ||||||
Expr3296 | |||||||
Expr5620 | |||||||
Expr5621 | |||||||
Expr1022225 | |||||||
Expr1032675 | |||||||
Expr1147434 | |||||||
Expr2017234 | |||||||
Expr2035370 | |||||||
Drives_construct | WBCnstr00002271 | ||||||
WBCnstr00004281 | |||||||
WBCnstr00011293 | |||||||
WBCnstr00034327 | |||||||
Construct_product | WBCnstr00034327 | ||||||
Microarray_results (21) | |||||||
Expression_cluster (77) | |||||||
Interaction | WBInteraction000031655 | ||||||
WBInteraction000196791 | |||||||
WBInteraction000293972 | |||||||
WBInteraction000393114 | |||||||
WBInteraction000399552 | |||||||
WBInteraction000417908 | |||||||
WBInteraction000432528 | |||||||
WBInteraction000463206 | |||||||
Map_info | Map | II | Position | 1.18896 | Error | 0.022497 | |
Positive | Positive_clone | D2013 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 5536 | |||||
Pseudo_map_position | |||||||
Reference | WBPaper00028877 | ||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
WBPaper00058949 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |