WormBase Tree Display for Gene: WBGene00003588
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WBGene00003588 | SMap | S_parent | Sequence | ZC155 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nex | ||||||
Allele (23) | |||||||
Legacy_information | [C.elegansII] NMK. Encodes protein with 42% identity to bovine annexin IV. Antibody stains pharyngeal grinder, gland cells, spermathecal folds. [CGC] | ||||||
Strain | WBStrain00035608 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (19) | |||||||
Ortholog (33) | |||||||
Paralog (3) | |||||||
Structured_description | Concise_description | nex-1 encodes an annexin, a member of a family of calcium-dependent phospholipid binding proteins; NEX-1 is required for efficient engulfment of apoptotic cell corpses in the pharynx, and may also function in other membrane fusion events, such as exocytosis; NEX-1 in vitro can bind phosphatidylserine, phosphatidylinositol, heparin, heparan sulfate, and chondroitin sulfate; NEX-1 is expressed in the pharynx, hypodermal cells, the vulva, the uterus, the spermathecal valve, and yolk granules of maturing oocytes. | Paper_evidence | WBPaper00003602 | |||
WBPaper00004309 | |||||||
WBPaper00005874 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enables heparin binding activity and phospholipid binding activity. Involved in engulfment of apoptotic cell. Located in intracellular membrane-bounded organelle and plasma membrane. Expressed in hypodermis; pharynx; spermathecal-uterine junction; uterine toroidal epithelial cell; and vulva. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | ZC155.1 | |||||
Corresponding_transcript | ZC155.1.1 | ||||||
Other_sequence | TLC00236_1 | ||||||
EX565409.1 | |||||||
BQ381252.1 | |||||||
Acan_isotig10128 | |||||||
PPC19017_1 | |||||||
DN190632.1 | |||||||
FE909107.1 | |||||||
JI179429.1 | |||||||
AS01230 | |||||||
HG03755 | |||||||
HCC01655_1 | |||||||
ASC08250_1 | |||||||
ASC02421_1 | |||||||
DVC02687_1 | |||||||
CRC06670_1 | |||||||
HC03352 | |||||||
DN191287.1 | |||||||
DN190665.1 | |||||||
DN190717.1 | |||||||
Tcol_isotig16712 | |||||||
Tcol_isotig16783 | |||||||
FE916732.1 | |||||||
FK804835.1 | |||||||
TX00403 | |||||||
HBC17690_1 | |||||||
AS03910 | |||||||
AAC00004_1 | |||||||
ES880568.1 | |||||||
HC05626 | |||||||
ACC10173_1 | |||||||
FE915510.1 | |||||||
EX916700.1 | |||||||
AS01639 | |||||||
DN190461.1 | |||||||
EX910179.1 | |||||||
AS09767 | |||||||
EV850941.1 | |||||||
EX828485.1 | |||||||
EG025402.1 | |||||||
Tcir_isotig06843 | |||||||
TCC02199_1 | |||||||
Tcol_isotig14132 | |||||||
JI175774.1 | |||||||
DN190528.1 | |||||||
ASC07215_1 | |||||||
AE01028 | |||||||
FJ768021.1 | |||||||
DN190508.1 | |||||||
DN191276.1 | |||||||
DN191143.1 | |||||||
TX00248 | |||||||
AI205471.1 | |||||||
HBC03960_1 | |||||||
HG02851 | |||||||
EX536429.1 | |||||||
HC01389 | |||||||
AS00806 | |||||||
FE911528.1 | |||||||
JO475531.1 | |||||||
EX009540.1 | |||||||
CBC09452_1 | |||||||
HC06123 | |||||||
DN190701.1 | |||||||
Oden_isotig28811 | |||||||
OVC01381_1 | |||||||
AF469059.1 | |||||||
FE913463.1 | |||||||
Dviv_isotig13678 | |||||||
BMC02129_1 | |||||||
JI180819.1 | |||||||
AA611004.1 | |||||||
AS01637 | |||||||
NB09989 | |||||||
FE916974.1 | |||||||
Oden_isotig17938 | |||||||
DN191329.1 | |||||||
TDC02079_1 | |||||||
JI215435.1 | |||||||
CR11530 | |||||||
ACC10736_1 | |||||||
EX555144.1 | |||||||
AYC00198_1 | |||||||
DN190550.1 | |||||||
FK806262.1 | |||||||
DN190709.1 | |||||||
Name_isotig01652 | |||||||
HC09835 | |||||||
AS01016 | |||||||
CB036286.1 | |||||||
TLC00203_1 | |||||||
HGC10481_1 | |||||||
NBC04190_1 | |||||||
DN191145.1 | |||||||
TCC00673_1 | |||||||
TX01034 | |||||||
Hbac_isotig01697 | |||||||
JI173166.1 | |||||||
ACC01305_1 | |||||||
HGC01138_1 | |||||||
JO468379.1 | |||||||
DN190682.1 | |||||||
CR11571 | |||||||
EX828209.1 | |||||||
FK806964.1 | |||||||
ASC00730_1 | |||||||
DN191153.1 | |||||||
CR02603 | |||||||
AS04107 | |||||||
CGC01364_1 | |||||||
DN190928.1 | |||||||
ES413745.1 | |||||||
ASC00851_1 | |||||||
HG03646 | |||||||
CJC02600_1 | |||||||
DN191233.1 | |||||||
ES880425.1 | |||||||
OVC03804 | |||||||
FE911406.1 | |||||||
Associated_feature | WBsf654958 | ||||||
WBsf717068 | |||||||
WBsf717895 | |||||||
WBsf992337 | |||||||
WBsf1014858 | |||||||
WBsf224881 | |||||||
Experimental_info | RNAi_result | WBRNAi00107729 | Inferred_automatically | RNAi_primary | |||
WBRNAi00087553 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00067291 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00027665 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00021578 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00080498 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00005118 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00107730 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00058747 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00041886 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1209 | ||||||
Expr1210 | |||||||
Expr1560 | |||||||
Expr8283 | |||||||
Expr1022217 | |||||||
Expr1031638 | |||||||
Expr1162168 | |||||||
Expr2013979 | |||||||
Expr2032219 | |||||||
Drives_construct | WBCnstr00010152 | ||||||
WBCnstr00036022 | |||||||
Construct_product | WBCnstr00036022 | ||||||
Antibody | WBAntibody00000107 | ||||||
WBAntibody00001198 | |||||||
Microarray_results (24) | |||||||
Expression_cluster (227) | |||||||
Interaction (36) | |||||||
WBProcess | WBbiopr:00000015 | ||||||
Map_info | Map | III | Position | -1.97258 | Error | 0.014291 | |
Positive | Positive_clone | ZC155 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4167 | |||||
4513 | |||||||
Pseudo_map_position | |||||||
Reference (17) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |