WormBase Tree Display for Gene: WBGene00003588
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WBGene00003588 | SMap | S_parent | Sequence | ZC155 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | nex-1 | |||||||
Sequence_name | ZC155.1 | ||||||||
Molecular_name | ZC155.1 | ||||||||
ZC155.1.1 | |||||||||
CE01431 | |||||||||
Other_name | CELE_ZC155.1 | Accession_evidence | NDB | BX284603 | |||||
Public_name | nex-1 | ||||||||
DB_info | Database | AceView | gene | 3G315 | |||||
WormQTL | gene | WBGene00003588 | |||||||
WormFlux | gene | WBGene00003588 | |||||||
NDB | locus_tag | CELE_ZC155.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003588|UniProtKB=G5EEA8 | |||||||
family | PTHR10502 | ||||||||
NCBI | gene | 175714 | |||||||
RefSeq | protein | NM_065708.10 | |||||||
TrEMBL | UniProtAcc | G5EEA8 | |||||||
UniProt_GCRP | UniProtAcc | G5EEA8 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nex | ||||||||
Allele (23) | |||||||||
Legacy_information | [C.elegansII] NMK. Encodes protein with 42% identity to bovine annexin IV. Antibody stains pharyngeal grinder, gland cells, spermathecal folds. [CGC] | ||||||||
Strain | WBStrain00035608 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (19) | |||||||||
Ortholog (33) | |||||||||
Paralog | WBGene00003589 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00003590 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00003591 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | nex-1 encodes an annexin, a member of a family of calcium-dependent phospholipid binding proteins; NEX-1 is required for efficient engulfment of apoptotic cell corpses in the pharynx, and may also function in other membrane fusion events, such as exocytosis; NEX-1 in vitro can bind phosphatidylserine, phosphatidylinositol, heparin, heparan sulfate, and chondroitin sulfate; NEX-1 is expressed in the pharynx, hypodermal cells, the vulva, the uterus, the spermathecal valve, and yolk granules of maturing oocytes. | Paper_evidence | WBPaper00003602 | |||||
WBPaper00004309 | |||||||||
WBPaper00005874 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enables heparin binding activity and phospholipid binding activity. Involved in engulfment of apoptotic cell. Located in intracellular membrane-bounded organelle and plasma membrane. Expressed in hypodermis; pharynx; spermathecal-uterine junction; uterine toroidal epithelial cell; and vulva. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | ZC155.1 | |||||||
Corresponding_transcript | ZC155.1.1 | ||||||||
Other_sequence | TLC00236_1 | ||||||||
EX565409.1 | |||||||||
BQ381252.1 | |||||||||
Acan_isotig10128 | |||||||||
PPC19017_1 | |||||||||
DN190632.1 | |||||||||
FE909107.1 | |||||||||
JI179429.1 | |||||||||
AS01230 | |||||||||
HG03755 | |||||||||
HCC01655_1 | |||||||||
ASC08250_1 | |||||||||
ASC02421_1 | |||||||||
DVC02687_1 | |||||||||
CRC06670_1 | |||||||||
HC03352 | |||||||||
DN191287.1 | |||||||||
DN190665.1 | |||||||||
DN190717.1 | |||||||||
Tcol_isotig16712 | |||||||||
Tcol_isotig16783 | |||||||||
FE916732.1 | |||||||||
FK804835.1 | |||||||||
TX00403 | |||||||||
HBC17690_1 | |||||||||
AS03910 | |||||||||
AAC00004_1 | |||||||||
ES880568.1 | |||||||||
HC05626 | |||||||||
ACC10173_1 | |||||||||
FE915510.1 | |||||||||
EX916700.1 | |||||||||
AS01639 | |||||||||
DN190461.1 | |||||||||
EX910179.1 | |||||||||
AS09767 | |||||||||
EV850941.1 | |||||||||
EX828485.1 | |||||||||
EG025402.1 | |||||||||
Tcir_isotig06843 | |||||||||
TCC02199_1 | |||||||||
Tcol_isotig14132 | |||||||||
JI175774.1 | |||||||||
DN190528.1 | |||||||||
ASC07215_1 | |||||||||
AE01028 | |||||||||
FJ768021.1 | |||||||||
DN190508.1 | |||||||||
DN191276.1 | |||||||||
DN191143.1 | |||||||||
TX00248 | |||||||||
AI205471.1 | |||||||||
HBC03960_1 | |||||||||
HG02851 | |||||||||
EX536429.1 | |||||||||
HC01389 | |||||||||
AS00806 | |||||||||
FE911528.1 | |||||||||
JO475531.1 | |||||||||
EX009540.1 | |||||||||
CBC09452_1 | |||||||||
HC06123 | |||||||||
DN190701.1 | |||||||||
Oden_isotig28811 | |||||||||
OVC01381_1 | |||||||||
AF469059.1 | |||||||||
FE913463.1 | |||||||||
Dviv_isotig13678 | |||||||||
BMC02129_1 | |||||||||
JI180819.1 | |||||||||
AA611004.1 | |||||||||
AS01637 | |||||||||
NB09989 | |||||||||
FE916974.1 | |||||||||
Oden_isotig17938 | |||||||||
DN191329.1 | |||||||||
TDC02079_1 | |||||||||
JI215435.1 | |||||||||
CR11530 | |||||||||
ACC10736_1 | |||||||||
EX555144.1 | |||||||||
AYC00198_1 | |||||||||
DN190550.1 | |||||||||
FK806262.1 | |||||||||
DN190709.1 | |||||||||
Name_isotig01652 | |||||||||
HC09835 | |||||||||
AS01016 | |||||||||
CB036286.1 | |||||||||
TLC00203_1 | |||||||||
HGC10481_1 | |||||||||
NBC04190_1 | |||||||||
DN191145.1 | |||||||||
TCC00673_1 | |||||||||
TX01034 | |||||||||
Hbac_isotig01697 | |||||||||
JI173166.1 | |||||||||
ACC01305_1 | |||||||||
HGC01138_1 | |||||||||
JO468379.1 | |||||||||
DN190682.1 | |||||||||
CR11571 | |||||||||
EX828209.1 | |||||||||
FK806964.1 | |||||||||
ASC00730_1 | |||||||||
DN191153.1 | |||||||||
CR02603 | |||||||||
AS04107 | |||||||||
CGC01364_1 | |||||||||
DN190928.1 | |||||||||
ES413745.1 | |||||||||
ASC00851_1 | |||||||||
HG03646 | |||||||||
CJC02600_1 | |||||||||
DN191233.1 | |||||||||
ES880425.1 | |||||||||
OVC03804 | |||||||||
FE911406.1 | |||||||||
Associated_feature | WBsf654958 | ||||||||
WBsf717068 | |||||||||
WBsf717895 | |||||||||
WBsf992337 | |||||||||
WBsf1014858 | |||||||||
WBsf224881 | |||||||||
Experimental_info | RNAi_result (10) | ||||||||
Expr_pattern | Expr1209 | ||||||||
Expr1210 | |||||||||
Expr1560 | |||||||||
Expr8283 | |||||||||
Expr1022217 | |||||||||
Expr1031638 | |||||||||
Expr1162168 | |||||||||
Expr2013979 | |||||||||
Expr2032219 | |||||||||
Drives_construct | WBCnstr00010152 | ||||||||
WBCnstr00036022 | |||||||||
Construct_product | WBCnstr00036022 | ||||||||
Antibody (2) | |||||||||
Microarray_results (24) | |||||||||
Expression_cluster (227) | |||||||||
Interaction (36) | |||||||||
WBProcess | WBbiopr:00000015 | ||||||||
Map_info | Map | III | Position | -1.97258 | Error | 0.014291 | |||
Positive | Positive_clone | ZC155 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4167 | |||||||
4513 | |||||||||
Pseudo_map_position | |||||||||
Reference (17) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |