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WormBase Tree Display for Gene: WBGene00015574

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Name Class

WBGene00015574SMapS_parentSequenceC07G3
IdentityVersion2
NameCGC_nameirg-1Person_evidenceWBPerson3965
Sequence_nameC07G3.2
Molecular_nameC07G3.2
C07G3.2.1
CE07993
Other_nameCELE_C07G3.2Accession_evidenceNDBBX284605
Public_nameirg-1
DB_infoDatabaseAceViewgene5D999
WormQTLgeneWBGene00015574
WormFluxgeneWBGene00015574
NDBlocus_tagCELE_C07G3.2
NCBIgene182379
RefSeqproteinNM_071582.5
TREEFAMTREEFAM_IDTF316991
TrEMBLUniProtAccO16327
UniProt_GCRPUniProtAccO16327
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:56WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
213 Jul 2009 13:51:47WBPerson9133Name_changeCGC_nameirg-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classirg
Allele (37)
RNASeq_FPKM (74)
GO_annotation00027834
00027835
00105960
00105967
00105968
OrthologWBGene00057825Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00028585Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00148174Caenorhabditis brenneriFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00125295Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00091737Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00133799Caenorhabditis japonicaFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00219065Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00194312Caenorhabditis brenneriFrom_analysisInparanoid_8
CBOVI.g1669Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g8403Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g6059Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g8549Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g8550Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g2339Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g2340Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g2342Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g2343Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g2344Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g2345Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g2346Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP39.g5266Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g5267Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g24045Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cnig_chr_V.g18155Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g21661Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01729.g22761Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_07844.g38200Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_12936Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_019516Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g12774Panagrellus redivivusFrom_analysisWormBase-Compara
chrV_pilon.g13769Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00302151Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00007440Caenorhabditis elegansFrom_analysisInparanoid_8
WormBase-Compara
WBGene00020747Caenorhabditis elegansFrom_analysisInparanoid_8
WormBase-Compara
WBGene00010436Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00012927Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00012968Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00016495Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020052Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionirg-1 encodes a protein containing a conserved DUF1768 domain, a domain of unknown function found as a stand-alone domain in bacterial and bacteriophage proteins as well as fused to proteins involved in riboflavin biosynthesis in bacteria and plants; irg-1 expression is induced in response to infection with pathogenic Pseudomonas aeruginosa, in a manner independent of the p38 MAPK pathway, but dependent upon the ZIP-2 bZIP transcription factor; irg-1 expression is also induced at a low level in response to cadmium exposure, in a manner that is dependent upon pmk-1.Paper_evidenceWBPaper00028789
WBPaper00035891
Curator_confirmedWBPerson1843
Date_last_updated08 Feb 2010 00:00:00
Automated_descriptionInvolved in antibacterial innate immune response and defense response to Gram-negative bacterium.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC07G3.2
Corresponding_transcriptC07G3.2.1
Other_sequenceCBC16326_1
Associated_featureWBsf231582
Experimental_infoRNAi_resultWBRNAi00040026Inferred_automaticallyRNAi_primary
WBRNAi00010403Inferred_automaticallyRNAi_primary
Expr_patternExpr8898
Expr1028122
Expr1144099
Expr2012816
Expr2031055
Drives_constructWBCnstr00005926
WBCnstr00013591
WBCnstr00028740
Construct_productWBCnstr00020134
WBCnstr00028740
Microarray_results (19)
Expression_cluster (303)
Interaction (63)
WBProcessWBbiopr:00000008
WBbiopr:00000039
Map_info (3)
Reference (17)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene