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WormBase Tree Display for Gene: WBGene00007772

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Name Class

WBGene00007772SMapS_parentSequenceC27C12
IdentityVersion2
NameCGC_nameegrh-1Person_evidenceWBPerson460
Sequence_nameC27C12.2
Molecular_name (3)
Other_nameCELE_C27C12.2Accession_evidenceNDBBX284606
Public_nameegrh-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
226 Mar 2007 13:57:19WBPerson2970Name_changeCGC_nameegrh-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classegrh
Allele (58)
StrainWBStrain00029951
WBStrain00051977
RNASeq_FPKM (74)
GO_annotation (13)
OrthologWBGene00058564Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00029591Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00153305Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00060651Caenorhabditis remaneiFrom_analysisOMA
TreeFam
WBGene00126928Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00035609Caenorhabditis briggsaeFrom_analysisWormBase-Compara
CSP26.g19700Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP31.g24989Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g9739Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g10301Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g9966Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g15996Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g22344Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g8770Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00059.g2992Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-egrh-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_III.g11846Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10028Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00534.g12550Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_02785.g27903Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_01707Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_025629Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_X0141100Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g20652Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00108289Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00267624Strongyloides rattiFrom_analysisWormBase-Compara
FB:FBgn0003499Drosophila melanogasterFrom_analysisOrthoInspector
Panther
ZFIN:ZDB-GENE-080204-90Danio rerioFrom_analysisPanther
SonicParanoid
HGNC:3238Homo sapiensFrom_analysisInparanoid
OrthoInspector
Panther
SonicParanoid
HGNC:3239Homo sapiensFrom_analysisInparanoid
Panther
SonicParanoid
HGNC:3240Homo sapiensFrom_analysisInparanoid
OrthoInspector
Panther
SonicParanoid
MGI:95295Mus musculusFrom_analysisInparanoid
OrthoInspector
Panther
MGI:95296Mus musculusFrom_analysisInparanoid
OrthoInspector
Panther
MGI:1306780Mus musculusFrom_analysisInparanoid
OrthoInspector
Panther
RGD:2544Rattus norvegicusFrom_analysisInparanoid
OrthoInspector
Panther
SonicParanoid
RGD:2545Rattus norvegicusFrom_analysisInparanoid
OrthoInspector
Panther
SonicParanoid
ParalogWBGene00003480Caenorhabditis elegansFrom_analysisPanther
WBGene00018990Caenorhabditis elegansFrom_analysisPanther
WBGene00009998Caenorhabditis elegansFrom_analysisPanther
WBGene00043705Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00009743Caenorhabditis elegansFrom_analysisPanther
WBGene00012735Caenorhabditis elegansFrom_analysisPanther
WBGene00044651Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionegrh-1 encodes a zinc finger protein that has similarity to the vertebrate EGR (early growth response factor) family of proteins, including the human EGR transcription factors; in C. elegans, EGRH-1 activity is required, non-autonomously in the gut and the somatic gonad, for regulation of oocyte meiotic maturation and ovulation; EGRH-1 is expressed in the somatic gonad, specifically in the gonadal sheath and distal tip cells, and in sperm, as well as in the gut, and other non-gonadal tissues.Paper_evidenceWBPaper00037082
Curator_confirmedWBPerson12884
WBPerson1843
WBPerson1823
WBPerson567
Date_last_updated12 Jan 2015 00:00:00
Automated_descriptionPredicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of oocyte maturation and negative regulation of ovulation. Located in nucleus and perinuclear region of cytoplasm. Expressed in body wall musculature; hermaphrodite somatic gonadal cell; nervous system; pharynx; and sperm. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; artery disease (multiple); lung disease (multiple); and neuropathy (multiple). Is an ortholog of human EGR1 (early growth response 1) and EGR3 (early growth response 3).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_model (19)
Molecular_infoCorresponding_CDSC27C12.2
Corresponding_transcriptC27C12.2.1
Other_sequence (22)
Associated_feature (14)
Transcription_factorWBTranscriptionFactor000963
Experimental_infoRNAi_resultWBRNAi00092959Inferred_automaticallyRNAi_primary
WBRNAi00029263Inferred_automaticallyRNAi_primary
WBRNAi00110186Inferred_automaticallyRNAi_primary
WBRNAi00076168Inferred_automaticallyRNAi_primary
WBRNAi00041323Inferred_automaticallyRNAi_primary
WBRNAi00110187Inferred_automaticallyRNAi_primary
WBRNAi00110188Inferred_automaticallyRNAi_primary
WBRNAi00011248Inferred_automaticallyRNAi_primary
WBRNAi00114391Inferred_automaticallyRNAi_primary
WBRNAi00070166Inferred_automaticallyRNAi_primary
Expr_patternExpr9107
Expr1017133
Expr1033368
Expr1145368
Expr2011234
Expr2029470
Drives_constructWBCnstr00008304
WBCnstr00008305
Construct_productWBCnstr00008304
AntibodyWBAntibody00002152
Microarray_results (20)
Expression_cluster (136)
Interaction (21)
Anatomy_functionWBbtf0409
WBbtf0410
WBbtf0411
WBbtf1061
Map_infoMapXPosition21.4389Error0.005794
PositivePositive_cloneC27C12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00027882
WBPaper00032994
WBPaper00037082
WBPaper00038491
WBPaper00055090
WBPaper00061738
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene