WormBase Tree Display for Gene: WBGene00001633

WBGene00001633 SMap: S_parent: Sequence: Y66A7AR
  Identity: Version: 1
    Name: CGC_name: gly-8 Person_evidence: WBPerson228
      Sequence_name: Y66A7A.6
      Molecular_name: Y66A7A.6
        Y66A7A.6.1
        CE15691
      Other_name: CELE_Y66A7A.6 Accession_evidence: NDB BX284603
      Public_name: gly-8
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:25 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: gly
    Allele (69)
    RNASeq_FPKM (74)
    GO_annotation (12)
    Ortholog: WBGene00063061 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00034039 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00191863 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00227239 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5740 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4937 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g6308 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g13619 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g11288 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g21072 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g4876 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7778 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g16579 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g20595 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00281.g8414 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_01018.g15375 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-gly-8 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold488.g2004 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00412.g11012 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_17622 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_010251 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11645 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g9413 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30091900 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g9063 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00125209 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00244538 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00115099 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00263464 Strongyloides ratti From_analysis: WormBase-Compara
      FB:FBgn0001970 Drosophila melanogaster From_analysis: OrthoFinder
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-060929-998 Danio rerio From_analysis: OrthoFinder
            Panther
            PhylomeDB
      HGNC:19875 Homo sapiens From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
      HGNC:21725 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
            Panther
            PhylomeDB
      MGI:2444392 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
      RGD:735097 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
      RGD:1565271 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OMA
            Panther
            PhylomeDB
    Paralog: WBGene00001628 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001629 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001630 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001631 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001632 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001635 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001636 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00012934 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: gly-8 encodes a predicted transmembrane polypeptide N-acetylgalactosaminyl transferase (ppGaNTase) similar to the essential Drosophila ppGaNTase encoded by Pgant35A; by homology, GLY-8 is predicted to function as a Golgi enzyme that catalyzes transfer of N-acetylgalactosamine to serine and threonine-containing acceptor peptides, thus initiating mucin-type O-glycosylation; as loss of gly-8 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of GLY-8 in C. elegans development and/or behavior is not yet known. Paper_evidence: WBPaper00003042
            WBPaper00005408
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable Notch binding activity and polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in protein O-linked glycosylation and regulation of Notch signaling pathway. Predicted to be located in Golgi apparatus. Is an ortholog of human GALNT11 (polypeptide N-acetylgalactosaminyltransferase 11) and GALNTL5 (polypeptide N-acetylgalactosaminyltransferase like 5). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y66A7A.6
    Corresponding_transcript: Y66A7A.6.1
    Other_sequence (40)
    Associated_feature: WBsf645629
      WBsf994445
      WBsf994446
      WBsf1016044
  Experimental_info: RNAi_result: WBRNAi00057927 Inferred_automatically: RNAi_primary
      WBRNAi00021252 Inferred_automatically: RNAi_primary
      WBRNAi00011727 Inferred_automatically: RNAi_primary
      WBRNAi00037715 Inferred_automatically: RNAi_primary
      WBRNAi00006034 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1014644
      Expr1030980
      Expr1161357
      Expr2012148
      Expr2030384
    Drives_construct: WBCnstr00036809
    Construct_product: WBCnstr00036809
    Microarray_results (22)
    Expression_cluster (274)
    Interaction (16)
  Map_info (4)
  Reference: WBPaper00003042
    WBPaper00005408
    WBPaper00017620
    WBPaper00026630
    WBPaper00029024
    WBPaper00038491
    WBPaper00055090
    WBPaper00061547
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene