WormBase Tree Display for Gene: WBGene00021553
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WBGene00021553 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | tyr-5 | Person_evidence | WBPerson260 | |||||
Sequence_name | Y44E3B.2 | ||||||||
Molecular_name | Y44E3B.2 | ||||||||
Y44E3B.2.1 | |||||||||
CE39838 | |||||||||
Other_name | CELE_Y44E3B.2 | Accession_evidence | NDB | BX284601 | |||||
Public_name | tyr-5 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 28 Jan 2010 16:20:10 | WBPerson2970 | Name_change | CGC_name | tyr-5 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | tyr | ||||||||
Allele (74) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00038649 | ||||||||
00125882 | |||||||||
Ortholog (38) | |||||||||
Paralog | WBGene00009001 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00010060 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00010661 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00015332 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00016419 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00017483 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00022231 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Predicted to enable oxidoreductase activity. Human ortholog(s) of this gene implicated in several diseases, including ocular albinism 1; oculocutaneous albinism (multiple); and vitiligo. Is an ortholog of human TYR (tyrosinase). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0050633 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12442) | ||||
DOID:8465 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12442) | ||||||
DOID:0070097 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12450) | ||||||
DOID:0050632 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12442,HGNC:12450) | ||||||
DOID:8923 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12442) | ||||||
DOID:12306 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12442) | ||||||
DOID:0070095 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12442) | ||||||
DOID:0070094 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12442) | ||||||
DOID:1909 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12442) | ||||||
DOID:10123 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12442,HGNC:12450) | ||||||
Molecular_info | Corresponding_CDS | Y44E3B.2 | |||||||
Corresponding_CDS_history | Y44E3B.2:wp154 | ||||||||
Corresponding_transcript | Y44E3B.2.1 | ||||||||
Other_sequence (11) | |||||||||
Associated_feature | WBsf983096 | ||||||||
Experimental_info | RNAi_result (3) | ||||||||
Expr_pattern | Expr1020061 | ||||||||
Expr1160035 | |||||||||
Expr2017689 | |||||||||
Expr2035827 | |||||||||
Microarray_results | SMD_Y44E3B.2 | ||||||||
SMD_Y54E10A_157.A | |||||||||
188763_at | |||||||||
A_12_P102636 | |||||||||
Aff_Y44E3B.2 | |||||||||
GPL13394_WBGene00021553 | |||||||||
GPL13914_Y44E3B.2 | |||||||||
GPL14144_Y44E3B.2_1059-1118_0.936_5_B | |||||||||
GPL14144_Y44E3B.2_1178-1237_0.956_1_A | |||||||||
GPL14144_Y44E3B.2_1296-1355_0.903_20_C | |||||||||
GPL19516_CGZ0046457 | |||||||||
GPL21109_Y44E3B.2 | |||||||||
GPL3518_CE18391 | |||||||||
GPL8304_CE_WBGene00021553_A | |||||||||
GPL8304_CE_WBGene00021553_B | |||||||||
GPL8673_Y44E3B_2P00198 | |||||||||
GPL8673_Y44E3B_2P00455 | |||||||||
GPL8673_Y44E3B_2P00826 | |||||||||
GPL9450_Y44E3B.2 | |||||||||
cea2.i.05979 | |||||||||
Expression_cluster (124) | |||||||||
Interaction (25) | |||||||||
Map_info | Map | I | Position | -4.25528 | Error | 0.043092 | |||
Positive | Positive_clone | Y44E3B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
WBPaper00064934 | |||||||||
WBPaper00065140 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |