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WormBase Tree Display for Gene: WBGene00009319

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Name Class

WBGene00009319SMapS_parentSequenceF32B6
IdentityVersion2
NameCGC_namemccc-1Person_evidenceWBPerson1997
Sequence_nameF32B6.2
Molecular_nameF32B6.2
F32B6.2.1
CE35517
Other_nameCELE_F32B6.2Accession_evidenceNDBBX284604
Public_namemccc-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
224 May 2012 16:25:35WBPerson2970Name_changeCGC_namemccc-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmccc
Allele (40)
StrainWBStrain00003137
WBStrain00054654
RNASeq_FPKM (74)
GO_annotation00034488
00034489
00034490
00034491
00034492
00034493
00034494
00117040
OrthologWBGene00026327Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00072101Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00155955Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00190805Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00134387Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00062655Caenorhabditis remaneiFrom_analysisInparanoid_8
WormBase-Compara
WBGene00103256Pristionchus pacificusFrom_analysisInparanoid_8
CBOVI.g8915Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g3301Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g5817Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g10250Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g10251Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g20792Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g23820Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g4932Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2807Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g17166Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g17979Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g19240Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g27246Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g4279Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g13037Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_04030.g18556Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_04301.g18749Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_10491.g22683Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_11528.g23297Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_13732.g24355Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_14480.g24663Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-mccc-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold585.g4843Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00103.g4368Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_13741Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_014418Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g09054Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g19709Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40157200Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11440Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00104457Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00260303Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00296567Trichuris murisFrom_analysisWormBase-Compara
WBGene00302348Trichuris murisFrom_analysisWormBase-Compara
SGD:S000000412Saccharomyces cerevisiaeFrom_analysisInparanoid
OrthoInspector
Panther
FB:FBgn0039877Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-050208-450Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:6936Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1919289Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1310615Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00017864Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004076Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00004258Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00012131Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionmccc-1 encodes an ortholog of the human gene ALPHA METHYLCROTONOYL-COENZYME A CARBOXYLASE 1 (MCCC1; 3-MCC), which when mutated leads to beta-methylcrotonyl-glycinuria (OMIM:210200).Paper_evidenceWBPaper00004637
Curator_confirmedWBPerson1843
WBPerson1823
WBPerson567
Date_last_updated26 Jun 2012 00:00:00
Automated_descriptionPredicted to enable ATP binding activity and ligase activity. Predicted to contribute to methylcrotonoyl-CoA carboxylase activity. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in 3-Methylcrotonyl-CoA carboxylase 1 deficiency. Is an ortholog of human MCCC1 (methylcrotonyl-CoA carboxylase subunit 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0080579Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:6936)
Molecular_infoCorresponding_CDSF32B6.2
Corresponding_CDS_historyF32B6.2:wp109
Corresponding_transcriptF32B6.2.1
Other_sequence (50)
Associated_featureWBsf646261
WBsf228897
Experimental_infoRNAi_resultWBRNAi00031663Inferred_automaticallyRNAi_primary
WBRNAi00046113Inferred_automaticallyRNAi_primary
WBRNAi00106992Inferred_automaticallyRNAi_primary
WBRNAi00014204Inferred_automaticallyRNAi_primary
WBRNAi00106969Inferred_automaticallyRNAi_primary
Expr_patternChronogram1957
Expr5931
Expr1013969
Expr1034073
Expr1149996
Expr2013445
Expr2031679
Drives_constructWBCnstr00003620
WBCnstr00032290
Construct_productWBCnstr00032290
Microarray_resultsSMD_F32B6.2
SMD_F32B6.2:2
192078_at
A_12_P111562
A_12_P160779
A_12_P160780
Aff_F32B6.2
GPL13394_WBGene00009319
GPL13914_F32B6.2
GPL14144_F32B6.2_1049-1108_0.890_41_A
GPL14144_F32B6.2_909-968_0.863_63_C
GPL14144_F32B6.2_977-1036_0.869_57_B
GPL19516_CGZ0019286
GPL21109_F32B6.2
GPL3518_CE09857
GPL8304_CE_WBGene00009319_A
GPL8304_CE_WBGene00009319_B
GPL8304_CE_WBGene00009319_C
GPL8673_F32B6_2P01047
GPL8673_F32B6_2P01091
GPL8673_F32B6_2P01846
GPL9450_F32B6.2
cea2.p.91584
Expression_cluster (141)
Interaction (178)
Map_infoMapIVPosition4.43716
PositivePositive_cloneF32B6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00042204
WBPaper00045076
WBPaper00055090
WBPaper00061818
WBPaper00062388
WBPaper00064323
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene