WormBase Tree Display for Gene: WBGene00002062
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| WBGene00002062 | SMap | S_parent | Sequence | C05D9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ife-4 | Person_evidence | WBPerson2 | |||||
| Sequence_name | C05D9.5 | ||||||||
| Molecular_name | C05D9.5 | ||||||||
| C05D9.5.1 | |||||||||
| CE07931 | |||||||||
| Other_name | CELE_C05D9.5 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | ife-4 | ||||||||
| DB_info | Database | AceView | gene | XB723 | |||||
| WormQTL | gene | WBGene00002062 | |||||||
| WormFlux | gene | WBGene00002062 | |||||||
| NDB | locus_tag | CELE_C05D9.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002062|UniProtKB=Q22888 | |||||||
| family | PTHR11960 | ||||||||
| NCBI | gene | 180464 | |||||||
| RefSeq | protein | NM_075809.5 | |||||||
| SwissProt | UniProtAcc | Q22888 | |||||||
| TREEFAM | TREEFAM_ID | TF101529 | |||||||
| UniProt_GCRP | UniProtAcc | Q22888 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ife | ||||||||
| Allele (36) | |||||||||
| Legacy_information | [Aamodt EJ] ife for Initiation Factor E family. No mutants known. Predicted gene C05D9.5 | ||||||||
| Strain | WBStrain00003351 | ||||||||
| WBStrain00024078 | |||||||||
| WBStrain00051134 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00002059 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00002060 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00002061 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00002063 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | The ife-4 gene encodes a member of the Initiation Factor 4E (eIF4E) family. | Curator_confirmed | WBPerson567 | |||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables RNA 7-methylguanosine cap binding activity. Predicted to be involved in regulation of translation and translational initiation. Predicted to be part of eukaryotic translation initiation factor 4F complex. Expressed in several structures, including HSN; pharyngeal cell; somatic cell; somatic gonad precursor; and somatic nervous system. Is an ortholog of human EIF4E2 (eukaryotic translation initiation factor 4E family member 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C05D9.5 | |||||||
| Corresponding_transcript | C05D9.5.1 | ||||||||
| Other_sequence (44) | |||||||||
| Associated_feature | WBsf647817 | ||||||||
| WBsf1003941 | |||||||||
| WBsf235309 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00093834 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00093841 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010215 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093843 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028506 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082161 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039764 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078518 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093840 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093842 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2328 | ||||||||
| Expr3459 | |||||||||
| Expr5177 | |||||||||
| Expr14696 | |||||||||
| Expr1021849 | |||||||||
| Expr1031215 | |||||||||
| Expr1143851 | |||||||||
| Expr2012688 | |||||||||
| Expr2030924 | |||||||||
| Drives_construct | WBCnstr00000889 | ||||||||
| WBCnstr00000890 | |||||||||
| WBCnstr00003822 | |||||||||
| WBCnstr00036484 | |||||||||
| Construct_product | WBCnstr00036484 | ||||||||
| Antibody | WBAntibody00000274 | ||||||||
| WBAntibody00002950 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (108) | |||||||||
| Interaction | WBInteraction000005685 | ||||||||
| WBInteraction000005686 | |||||||||
| WBInteraction000005687 | |||||||||
| WBInteraction000005688 | |||||||||
| WBInteraction000005689 | |||||||||
| WBInteraction000115587 | |||||||||
| WBInteraction000115588 | |||||||||
| WBInteraction000115589 | |||||||||
| WBInteraction000115590 | |||||||||
| WBInteraction000126520 | |||||||||
| WBInteraction000126572 | |||||||||
| WBInteraction000126574 | |||||||||
| WBInteraction000126575 | |||||||||
| WBInteraction000175188 | |||||||||
| WBInteraction000179823 | |||||||||
| WBInteraction000221244 | |||||||||
| WBInteraction000227628 | |||||||||
| WBInteraction000235607 | |||||||||
| WBInteraction000235641 | |||||||||
| WBInteraction000257437 | |||||||||
| WBInteraction000294940 | |||||||||
| WBInteraction000305690 | |||||||||
| WBInteraction000341611 | |||||||||
| WBInteraction000374804 | |||||||||
| WBInteraction000375164 | |||||||||
| WBInteraction000385681 | |||||||||
| WBInteraction000387717 | |||||||||
| WBInteraction000387848 | |||||||||
| WBInteraction000387849 | |||||||||
| WBInteraction000387850 | |||||||||
| WBInteraction000387851 | |||||||||
| WBInteraction000387852 | |||||||||
| WBInteraction000387853 | |||||||||
| WBInteraction000389919 | |||||||||
| WBInteraction000423155 | |||||||||
| WBInteraction000427497 | |||||||||
| WBInteraction000427677 | |||||||||
| WBInteraction000439387 | |||||||||
| WBInteraction000442734 | |||||||||
| WBInteraction000449097 | |||||||||
| WBInteraction000449855 | |||||||||
| WBInteraction000501571 | |||||||||
| WBInteraction000501572 | |||||||||
| WBInteraction000501573 | |||||||||
| WBInteraction000501574 | |||||||||
| WBInteraction000565051 | |||||||||
| WBInteraction000571591 | |||||||||
| WBInteraction000571659 | |||||||||
| WBInteraction000582240 | |||||||||
| Map_info | Map | X | Position | -18.6013 | Error | 0.055519 | |||
| Positive | Positive_clone | C05D9 | Person_evidence | WBPerson2 | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Mapping_data | Multi_point | 4434 | |||||||
| Pseudo_map_position | |||||||||
| Reference (21) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
